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kin Kin17 DNA and RNA binding protein [ Danio rerio (zebrafish) ]

Gene ID: 555316, updated on 27-Mar-2024

Summary

Official Symbol
kinprovided by ZNC
Official Full Name
Kin17 DNA and RNA binding proteinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-3689
See related
Ensembl:ENSDARG00000045515 AllianceGenome:ZFIN:ZDB-GENE-030131-3689
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc49f10; wu:fc49f10; zgc:123169; si:ch211-235a22.3
Summary
Predicted to enable double-stranded DNA binding activity. Predicted to be involved in DNA replication and cellular response to DNA damage stimulus. Predicted to be active in nucleus. Orthologous to human KIN (Kin17 DNA and RNA binding protein). [provided by Alliance of Genome Resources, Apr 2022]
Annotation information
Annotation category: partial on reference assembly
Orthologs
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Genomic context

Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (25181572..25188103)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (25192374..25198905)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene GATA binding protein 3 Neighboring gene TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto Neighboring gene ATP synthase F1 subunit gamma Neighboring gene inter-alpha-trypsin inhibitor heavy chain 2 Neighboring gene inter-alpha-trypsin inhibitor heavy chain 5 Neighboring gene transmembrane protein 110, like

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Clone Names

  • MGC123169

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables double-stranded DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in DNA damage response IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in DNA replication IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
DNA/RNA-binding protein KIN17
Names
KIN, antigenic determinant of recA protein homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030086.3NP_001025257.3  DNA/RNA-binding protein KIN17

    Status: VALIDATED

    Source sequence(s)
    BX640594
    Related
    ENSDARP00000072990.5, ENSDART00000078529.5

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    25181572..25188103
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)