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zgc:113019 zgc:113019 [ Danio rerio (zebrafish) ]

Gene ID: 550590, updated on 27-Mar-2024

Summary

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Official Symbol
zgc:113019provided by ZNC
Official Full Name
zgc:113019provided by ZNC
Primary source
ZFIN:ZDB-GENE-050417-449
See related
Ensembl:ENSDARG00000099743 AllianceGenome:ZFIN:ZDB-GENE-050417-449
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable DNA binding activity and metal ion binding activity. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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Location:
chromosome: 21
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (7131970..7136933)
105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (7570479..7575435)

Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1, regulatory subunit 26 Neighboring gene mitochondrial ribosomal protein S2 Neighboring gene uncharacterized LOC101886388 Neighboring gene divergent protein kinase domain 1B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
spindle and kinetochore associated complex subunit 3; uncharacterized protein LOC550590

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001017891.1 → NP_001017891.1  uncharacterized protein LOC550590

    See identical proteins and their annotated locations for NP_001017891.1

    Status: PREDICTED

    Source sequence(s)
    BC093417
    UniProtKB/TrEMBL
    A0A8M1N5L9, Q566P6
    Related
    ENSDARP00000132897.1, ENSDART00000161921.3
    Conserved Domains (3) summary
    smart00980
    Location:4 → 95
    THAP; The THAP domain is a putative DNA-binding domain (DBD) and probably also binds a zinc ion
    pfam13359
    Location:339 → 498
    DDE_Tnp_4; DDE superfamily endonuclease
    pfam13613
    Location:257 → 309
    HTH_Tnp_4; Helix-turn-helix of DDE superfamily endonuclease

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007132.7 Reference GRCz11 Primary Assembly

    Range
    7131970..7136933
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021468821.1 → XP_021324496.1  spindle and kinetochore associated complex subunit 3 isoform X1

    UniProtKB/TrEMBL
    A0A8M9P3A4
    Conserved Domains (2) summary
    pfam13359
    Location:258 → 417
    DDE_Tnp_4; DDE superfamily endonuclease
    pfam13613
    Location:176 → 228
    HTH_Tnp_4; Helix-turn-helix of DDE superfamily endonuclease

  2. XM_021468822.1 → XP_021324497.1  spindle and kinetochore associated complex subunit 3 isoform X1

    UniProtKB/TrEMBL
    A0A8M9P3A4
    Conserved Domains (2) summary
    pfam13359
    Location:258 → 417
    DDE_Tnp_4; DDE superfamily endonuclease
    pfam13613
    Location:176 → 228
    HTH_Tnp_4; Helix-turn-helix of DDE superfamily endonuclease
Nucleotide Protein Strain
Heading Accession and Version

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