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TSNARE1 t-SNARE domain containing 1 [ Bos taurus (cattle) ]

Gene ID: 535306, updated on 3-Apr-2024

Summary

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Official Symbol
TSNARE1provided by VGNC
Official Full Name
t-SNARE domain containing 1provided by VGNC
Primary source
VGNC:VGNC:36423
See related
BGD:BT23278; Ensembl:ENSBTAG00000009974
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 14
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 14 NC_037341.1 (1902552..2019964)

Chromosome 14 - NC_037341.1Genomic Context describing neighboring genes Neighboring gene maestro heat-like repeat family member 5 Neighboring gene adhesion G protein-coupled receptor B1 Neighboring gene uncharacterized LOC132342240 Neighboring gene uncharacterized LOC112449591 Neighboring gene uncharacterized LOC112449568 Neighboring gene uncharacterized LOC101905853

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037341.1 Chromosome 14 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC148885

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
t-SNARE domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001082446.2 → NP_001075915.1  t-SNARE domain-containing protein 1

    See identical proteins and their annotated locations for NP_001075915.1

    Status: PROVISIONAL

    Source sequence(s)
    BC133610
    UniProtKB/TrEMBL
    A2VE76
    Conserved Domains (3) summary
    cd15877
    Location:399 → 462
    SNARE_TSNARE1; SNARE motif of TSNARE1
    pfam13873
    Location:121 → 195
    Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain
    pfam14523
    Location:251 → 348
    Syntaxin_2; Syntaxin-like protein

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037341.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    1902552..2019964
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059893308.1 → XP_059749291.1  t-SNARE domain-containing protein 1 isoform X6

  2. XM_059893307.1 → XP_059749290.1  t-SNARE domain-containing protein 1 isoform X5

  3. XM_059893305.1 → XP_059749288.1  t-SNARE domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q1M9M1
    Related
    ENSBTAP00000066870.1, ENSBTAT00000067434.2

  4. XM_005215221.5 → XP_005215278.1  t-SNARE domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1MIK3, A0A3Q1MUQ3
    Related
    ENSBTAP00000068998.1, ENSBTAT00000072801.2
    Conserved Domains (3) summary
    pfam13873
    Location:121 → 195
    Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain
    pfam14523
    Location:251 → 348
    Syntaxin_2; Syntaxin-like protein
    cl22856
    Location:399 → 439
    SNARE; SNARE motif

  5. XM_059893304.1 → XP_059749287.1  t-SNARE domain-containing protein 1 isoform X2

  6. XM_059893306.1 → XP_059749289.1  t-SNARE domain-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A3Q1MW42
    Related
    ENSBTAP00000059521.1, ENSBTAT00000081517.2

  7. XM_015474355.3 → XP_015329841.3  t-SNARE domain-containing protein 1 isoform X7

RNA

  1. XR_009497077.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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