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TSNAX translin associated factor X [ Bos taurus (cattle) ]

Gene ID: 533927, updated on 5-Mar-2024

Summary

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Gene symbol
TSNAX
Gene description
translin associated factor X
See related
Ensembl:ENSBTAG00000047434
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 28
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 28 NC_037355.1 (4336914..4373968)

Chromosome 28 - NC_037355.1Genomic Context describing neighboring genes Neighboring gene BCL2/adenovirus E1B interacting protein 3 pseudogene Neighboring gene tubulin beta chain Neighboring gene small nucleolar RNA SNORD65 Neighboring gene small ribosomal subunit protein eS24-like Neighboring gene DISC1 scaffold protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037355.1 Chromosome 28 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC142669

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
translin-associated protein X

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001076006.4 → NP_001069474.2  translin-associated protein X isoform 1

    See identical proteins and their annotated locations for NP_001069474.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    BC120296, EH137560, EV664525, EW682396, NKLS02000028
    UniProtKB/TrEMBL
    G3MY03
    Related
    ENSBTAP00000054428.2, ENSBTAT00000065270.3
    Conserved Domains (1) summary
    cd14805
    Location:42 → 256
    Translin-like; Translin and translin-associated factor-X (TRAX)

  2. NM_001314062.2 → NP_001300991.1  translin-associated protein X isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate exon in the 3' coding region, resulting in a frameshift and an early stop codon, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
    Source sequence(s)
    BC120296, EH137560, EV664525, EW682396, NKLS02000028
    UniProtKB/TrEMBL
    Q0VC87
    Related
    ENSBTAP00000054483.1, ENSBTAT00000063092.2
    Conserved Domains (1) summary
    cl00957
    Location:42 → 122
    Translin-like; Translin and translin-associated factor-X (TRAX)

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037355.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    4336914..4373968
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059882547.1 → XP_059738530.1  translin-associated protein X isoform X1

    Related
    ENSBTAP00000099644.1, ENSBTAT00000095348.1

RNA

  1. XR_001495323.3 RNA Sequence

    Related
    ENSBTAT00000129239.1
Nucleotide Protein Strain
Heading Accession and Version

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