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PDLIM7 PDZ and LIM domain 7 [ Bos taurus (cattle) ]

Gene ID: 533851, updated on 5-Mar-2024

Summary

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Official Symbol
PDLIM7provided by VGNC
Official Full Name
PDZ and LIM domain 7provided by VGNC
Primary source
VGNC:VGNC:32712
See related
BGD:BT11381; Ensembl:ENSBTAG00000069499
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 7 NC_037334.1 (38975500..38995593, complement)

Chromosome 7 - NC_037334.1Genomic Context describing neighboring genes Neighboring gene proline rich 7, synaptic Neighboring gene drebrin 1 Neighboring gene docking protein 3 Neighboring gene DEAD-box helicase 41

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037334.1 Chromosome 7 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index. Sonstegard TS, et al. Mamm Genome, 2002 Jul. PMID 12140684
  2. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
  3. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
  4. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables muscle alpha-actinin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in muscle structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of filamentous actin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PDZ and LIM domain protein 7
Names
PDZ and LIM domain 7 (enigma)
enigma protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001017947.1 → NP_001017947.1  PDZ and LIM domain protein 7 isoform 1

    See identical proteins and their annotated locations for NP_001017947.1

    Status: PROVISIONAL

    Source sequence(s)
    BT020909
    UniProtKB/Swiss-Prot
    Q3SX40
    Conserved Domains (2) summary
    cd00992
    Location:5 → 79
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:129 → 188
    DUF4749; Domain of unknown function (DUF4749)

  2. NM_001113251.1 → NP_001106722.1  PDZ and LIM domain protein 7 isoform 2

    See identical proteins and their annotated locations for NP_001106722.1

    Status: PROVISIONAL

    Source sequence(s)
    BC104521
    UniProtKB/Swiss-Prot
    Q3SX40, Q5E9L1
    UniProtKB/TrEMBL
    A0A452DI64
    Related
    ENSBTAP00000057436.2, ENSBTAT00000084797.2
    Conserved Domains (5) summary
    cd09452
    Location:249 → 300
    LIM1_Enigma; The first LIM domain of Enigma
    cd09458
    Location:367 → 421
    LIM3_Enigma; The third LIM domain of Enigma
    cd00992
    Location:5 → 79
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl02475
    Location:308 → 359
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
    cl26464
    Location:84 → 220
    Atrophin-1; Atrophin-1 family

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037334.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    38975500..38995593 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005209202.5 → XP_005209259.1  PDZ and LIM domain protein 7 isoform X1

    See identical proteins and their annotated locations for XP_005209259.1

    UniProtKB/TrEMBL
    A0A452DI64, A1L5A7
    Related
    ENSBTAP00000024902.4, ENSBTAT00000024902.6
    Conserved Domains (5) summary
    cd09452
    Location:283 → 334
    LIM1_Enigma; The first LIM domain of Enigma
    cd09456
    Location:342 → 393
    LIM2_Enigma; The second LIM domain of Enigma
    cd09458
    Location:401 → 455
    LIM3_Enigma; The third LIM domain of Enigma
    cd00992
    Location:5 → 79
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl26464
    Location:80 → 254
    Atrophin-1; Atrophin-1 family

  2. XM_005209203.5 → XP_005209260.1  PDZ and LIM domain protein 7 isoform X1

    See identical proteins and their annotated locations for XP_005209260.1

    UniProtKB/TrEMBL
    A0A452DI64, A1L5A7
    Conserved Domains (5) summary
    cd09452
    Location:283 → 334
    LIM1_Enigma; The first LIM domain of Enigma
    cd09456
    Location:342 → 393
    LIM2_Enigma; The second LIM domain of Enigma
    cd09458
    Location:401 → 455
    LIM3_Enigma; The third LIM domain of Enigma
    cd00992
    Location:5 → 79
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl26464
    Location:80 → 254
    Atrophin-1; Atrophin-1 family

  3. XM_005209205.5 → XP_005209262.1  PDZ and LIM domain protein 7 isoform X2

    See identical proteins and their annotated locations for XP_005209262.1

    UniProtKB/Swiss-Prot
    Q3SX40
    Related
    ENSBTAP00000009662.3, ENSBTAT00000009662.4
    Conserved Domains (2) summary
    cd00992
    Location:5 → 79
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:129 → 188
    DUF4749; Domain of unknown function (DUF4749)

  4. XM_010807159.4 → XP_010805461.1  PDZ and LIM domain protein 7 isoform X2

    See identical proteins and their annotated locations for XP_010805461.1

    UniProtKB/Swiss-Prot
    Q3SX40
    Conserved Domains (2) summary
    cd00992
    Location:5 → 79
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:129 → 188
    DUF4749; Domain of unknown function (DUF4749)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3SX40.1 GenPept UniProtKB/Swiss-Prot:Q3SX40

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