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APOM apolipoprotein M [ Bos taurus (cattle) ]

Gene ID: 505830, updated on 5-Mar-2024

Summary

Official Symbol
APOMprovided by VGNC
Official Full Name
apolipoprotein Mprovided by VGNC
Primary source
VGNC:VGNC:26034
See related
BGD:BT11930; Ensembl:ENSBTAG00000008833
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
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Genomic context

Location:
chromosome: 23
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 23 NC_037350.1 (27641578..27646518, complement)

Chromosome 23 - NC_037350.1Genomic Context describing neighboring genes Neighboring gene casein kinase 2 beta Neighboring gene G-patch domain and ankyrin repeats 1 Neighboring gene chromosome 23 C6orf47 homolog Neighboring gene BAG cochaperone 6 Neighboring gene proline rich coiled-coil 2A Neighboring gene small nucleolar RNA SNORA38 Neighboring gene natural cytotoxicity triggering receptor 3 Neighboring gene allograft inflammatory factor 1

Genomic regions, transcripts, and products

Genomic Sequence:
NC_037350.1 Chromosome 23 Reference ARS-UCD2.0 Primary Assembly

General gene information

Markers

Clone Names

  • MGC128780

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lipid transporter activity IEA
Inferred from Electronic Annotation
more info
PubMed 
enables phospholipid binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in cholesterol efflux IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in high-density lipoprotein particle assembly IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in high-density lipoprotein particle clearance IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in high-density lipoprotein particle remodeling IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
part_of high-density lipoprotein particle IEA
Inferred from Electronic Annotation
more info
PubMed 
part_of low-density lipoprotein particle IEA
Inferred from Electronic Annotation
more info
PubMed 
part_of very-low-density lipoprotein particle IEA
Inferred from Electronic Annotation
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001034257.2NP_001029429.2  apolipoprotein M precursor

    See identical proteins and their annotated locations for NP_001029429.2

    Status: VALIDATED

    Source sequence(s)
    BC103165, DV807269
    UniProtKB/TrEMBL
    F1MYX2
    Related
    ENSBTAP00000099335.1, ENSBTAT00000114543.1
    Conserved Domains (1) summary
    cl21528
    Location:1187
    Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037350.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    27641578..27646518 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005223605.4XP_005223662.1  apolipoprotein M isoform X3

    See identical proteins and their annotated locations for XP_005223662.1

    UniProtKB/TrEMBL
    Q3ZBQ9
    Conserved Domains (1) summary
    cl21528
    Location:1115
    Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family
  2. XM_010818315.4XP_010816617.1  apolipoprotein M isoform X1

    See identical proteins and their annotated locations for XP_010816617.1

    UniProtKB/TrEMBL
    F1MYX2
    Conserved Domains (1) summary
    cl21528
    Location:1187
    Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family
  3. XM_059880250.1XP_059736233.1  apolipoprotein M isoform X3

    UniProtKB/TrEMBL
    Q3ZBQ9
  4. XM_059880249.1XP_059736232.1  apolipoprotein M isoform X2