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usp47.L ubiquitin specific peptidase 47 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 495686, updated on 11-Apr-2024

Summary

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Official Symbol
usp47.L
Official Full Name
ubiquitin specific peptidase 47 L homeolog
Primary source
Xenbase:XB-GENE-5760104
Locus tag
XELAEV_18021775mg
See related
EnsemblRapid:ENSXLAG00005020528
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
usp47
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Genomic context

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Location:
chromosome: 4L
Exon count:
30
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4L NC_054377.1 (4145765..4191121)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4L NC_030730.1 (4205754..4251302)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016714857.1 (1..723, complement)

Chromosome 4L - NC_054377.1Genomic Context describing neighboring genes Neighboring gene polypeptide N-acetylgalactosaminyltransferase 18 L homeolog Neighboring gene uncharacterized LOC108713449 Neighboring gene dickkopf WNT signaling pathway inhibitor 3 L homeolog Neighboring gene microtubule associated monooxygenase, calponin and LIM domain containing 2 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
  
enables cysteine-type deubiquitinase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables cysteine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA damage response ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within DNA repair IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within base-excision repair ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within monoubiquitinated protein deubiquitination ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within proteolysis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 47
Names
Deubiquitinating enzyme 47
Ubiquitin thiolesterase 47
Ubiquitin-specific-processing protease 47
ubiquitin thioesterase 47
NP_001088634.1
XP_041445314.1
XP_041445315.1
XP_041445316.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095165.1 → NP_001088634.1  ubiquitin carboxyl-terminal hydrolase 47

    See identical proteins and their annotated locations for NP_001088634.1

    Status: PROVISIONAL

    Source sequence(s)
    BC086278
    UniProtKB/Swiss-Prot
    Q5U252
    Related
    ENSXLAP00005060540.1, ENSXLAT00005061989.1
    Conserved Domains (2) summary
    cd02659
    Location:171 → 550
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam00443
    Location:172 → 545
    UCH; Ubiquitin carboxyl-terminal hydrolase

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    4145765..4191121
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041589380.1 → XP_041445314.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X1

    UniProtKB/TrEMBL
    A0A8J1MU06
    Related
    ENSXLAP00005060602.1, ENSXLAT00005062051.1
    Conserved Domains (1) summary
    cd02659
    Location:191 → 570
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  2. XM_041589381.1 → XP_041445315.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X2

    UniProtKB/TrEMBL
    A0A8J1MWE2
    Conserved Domains (1) summary
    cd02659
    Location:191 → 569
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  3. XM_041589382.1 → XP_041445316.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X3

    UniProtKB/TrEMBL
    A0A8J1MV48
    Related
    ENSXLAP00005060444.1, ENSXLAT00005061893.1
    Conserved Domains (1) summary
    cd02659
    Location:184 → 563
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5U252.1 GenPept UniProtKB/Swiss-Prot:Q5U252

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