KLF13 KLF transcription factor 13 [Sus scrofa (pig)] - Gene

Summary

Official Symbol: KLF13provided by VGNC
Official Full Name: KLF transcription factor 13provided by VGNC
Primary source: VGNC:VGNC:89493
See related: Ensembl:ENSSSCG00000026006
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Sus scrofa
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression: Ubiquitous expression in lung (RPKM 28.1), spleen (RPKM 19.7) and 8 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
106	current	Sscrofa11.1 (GCF_000003025.6)	1	NC_010443.5 (143499136..143540233, complement)
105	previous assembly	Sscrofa10.2 (GCF_000003025.5)	1	NC_010443.4 (159400720..159485260, complement)

Chromosome 1 - NC_010443.5 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Transcriptome data used for gene annotation
Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
BioProject: PRJNA311523
Publication: PMID 27646534
Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

KLF13 and SREBP-Sp1 activation interact to regulate low density lipoprotein receptor promoter function
Title: A novel functional interaction between the Sp1-like protein KLF13 and SREBP-Sp1 activation complex underlies regulation of low density lipoprotein receptor promoter function.

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: Krueppel-like factor 13

Names: Kruppel like factor 13

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001011505.1 → NP_001011505.1 Krueppel-like factor 13

See identical proteins and their annotated locations for NP_001011505.1

Status: PROVISIONAL

Source sequence(s)

AY850382

UniProtKB/TrEMBL

A0A4X1UD84, C7EMF3, Q5I6A3

Related

ENSSSCP00000025562.1, ENSSSCT00000032440.3

Conserved Domains (4) summary

COG5048
Location:166 → 256

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:173 → 195

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam00096
Location:231 → 253

zf-C2H2; Zinc finger, C2H2 type

pfam13465
Location:217 → 240

zf-H2C2_2; Zinc-finger double domain