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LGI3 leucine rich repeat LGI family member 3 [ Canis lupus familiaris (dog) ]

Gene ID: 486128, updated on 5-Mar-2024

Summary

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Official Symbol
LGI3provided by VGNC
Official Full Name
leucine rich repeat LGI family member 3provided by VGNC
Primary source
VGNC:VGNC:42652
See related
Ensembl:ENSCAFG00845025793
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See LGI3 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
8
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 25 NC_051829.1 (35308828..35317292)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 25 NC_006607.4 (35687040..35695518)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 25 NC_049246.1 (35264308..35272778)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 25 NC_049285.1 (35254281..35262751)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 25 NC_049766.1 (35108844..35117307)

Chromosome 25 - NC_051829.1Genomic Context describing neighboring genes Neighboring gene bone morphogenetic protein 1 Neighboring gene surfactant protein C Neighboring gene receptor accessory protein 4 Neighboring gene HR lysine demethylase and nuclear receptor corepressor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat LGI family member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051829.1 Reference ROS_Cfam_1.0

    Range
    35308828..35317292
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038435480.1 → XP_038291408.1  leucine-rich repeat LGI family member 3

    UniProtKB/TrEMBL
    A0A8C0KVA2, A0A8C0TMM9, A0A8I3PW83, A0A8P0NBV2
    Related
    ENSCAFP00845035832.1, ENSCAFT00845045668.1
    Conserved Domains (4) summary
    TIGR00864
    Location:149 → 224
    PCC; polycystin cation channel protein
    sd00031
    Location:74 → 95
    LRR_1; leucine-rich repeat [structural motif]
    pfam03736
    Location:228 → 267
    EPTP; EPTP domain
    pfam13855
    Location:118 → 178
    LRR_8; Leucine rich repeat

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049285.1 Alternate UMICH_Zoey_3.1

    Range
    35254281..35262751
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038510423.1 → XP_038366351.1  leucine-rich repeat LGI family member 3

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049766.1 Alternate UNSW_CanFamBas_1.0

    Range
    35108844..35117307
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038638189.1 → XP_038494117.1  leucine-rich repeat LGI family member 3

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049246.1 Alternate UU_Cfam_GSD_1.0

    Range
    35264308..35272778
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038573869.1 → XP_038429797.1  leucine-rich repeat LGI family member 3

    UniProtKB/TrEMBL
    A0A8C0TMM9, A0A8I3PW83, A0A8P0NBV2

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006607.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    35687040..35695518
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_543254.7 → XP_543254.3  leucine-rich repeat LGI family member 3

    UniProtKB/TrEMBL
    A0A8C0TMM9, A0A8I3PW83, A0A8P0NBV2
    Conserved Domains (6) summary
    smart00370
    Location:141 → 164
    LRR; Leucine-rich repeats, outliers
    smart00082
    Location:176 → 224
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:74 → 95
    LRR_1; leucine-rich repeat [structural motif]
    pfam03736
    Location:228 → 269
    EPTP; EPTP domain
    pfam12799
    Location:119 → 158
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:118 → 178
    LRR_8; Leucine rich repeat
Nucleotide Protein
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