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PYM1 PYM homolog 1, exon junction complex associated factor [ Canis lupus familiaris (dog) ]

Gene ID: 481101, updated on 5-Mar-2024

Summary

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Official Symbol
PYM1provided by VGNC
Official Full Name
PYM homolog 1, exon junction complex associated factorprovided by VGNC
Primary source
VGNC:VGNC:45228
See related
Ensembl:ENSCAFG00845005627
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
3
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 10 NC_051814.1 (258425..273883, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 10 NC_006592.4 (313556..329002, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 10 NC_049231.1 (603362..618810, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 10 NC_049270.1 (236317..251770, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 10 NC_049751.1 (479055..494483, complement)

Chromosome 10 - NC_051814.1Genomic Context describing neighboring genes Neighboring gene matrix metallopeptidase 19 Neighboring gene peptidyl-prolyl cis-trans isomerase D-like Neighboring gene diacylglycerol kinase alpha Neighboring gene premelanosome protein Neighboring gene cyclin dependent kinase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in exon-exon junction complex disassembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of exon-exon junction complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
partner of Y14 and mago

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051814.1 Reference ROS_Cfam_1.0

    Range
    258425..273883 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038678938.1 → XP_038534866.1  partner of Y14 and mago

    UniProtKB/TrEMBL
    A0A8C0LUJ1, A0A8C0NJ10, A0A8I3NC42
    Related
    ENSCAFP00845007794.1, ENSCAFT00845009988.1
    Conserved Domains (1) summary
    pfam09282
    Location:11 → 37
    Mago-bind; Mago binding

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049270.1 Alternate UMICH_Zoey_3.1

    Range
    236317..251770 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038487714.1 → XP_038343642.1  partner of Y14 and mago

    Conserved Domains (1) summary
    pfam09282
    Location:11 → 37
    Mago-bind; Mago binding

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049751.1 Alternate UNSW_CanFamBas_1.0

    Range
    479055..494483 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038613573.1 → XP_038469501.1  partner of Y14 and mago

    Conserved Domains (1) summary
    pfam09282
    Location:11 → 37
    Mago-bind; Mago binding

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049231.1 Alternate UU_Cfam_GSD_1.0

    Range
    603362..618810 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038549602.1 → XP_038405530.1  partner of Y14 and mago

    UniProtKB/TrEMBL
    A0A8C0LUJ1, A0A8C0NJ10, A0A8I3NC42
    Conserved Domains (1) summary
    pfam09282
    Location:11 → 37
    Mago-bind; Mago binding

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006592.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    313556..329002 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_538222.7 → XP_538222.2  partner of Y14 and mago

    UniProtKB/TrEMBL
    A0A8C0LUJ1, A0A8C0NJ10, A0A8I3NC42
    Conserved Domains (1) summary
    pfam09282
    Location:11 → 37
    Mago-bind; Mago binding
Nucleotide Protein
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