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CTCF CCCTC-binding factor [ Canis lupus familiaris (dog) ]

Gene ID: 479684, updated on 5-Mar-2024

Summary

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Official Symbol
CTCFprovided by VGNC
Official Full Name
CCCTC-binding factorprovided by VGNC
Primary source
VGNC:VGNC:39690
See related
Ensembl:ENSCAFG00845007437
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See CTCF in Genome Data Viewer
Location:
chromosome: 5
Exon count:
14
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 5 NC_051809.1 (82243654..82298999, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 5 NC_006587.4 (81798220..81853471, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 5 NC_049226.1 (82394029..82449348, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 5 NC_049265.1 (82069946..82125241, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 5 NC_049746.1 (81751450..81806353, complement)

Chromosome 5 - NC_051809.1Genomic Context describing neighboring genes Neighboring gene capping protein regulator and myosin 1 linker 2 Neighboring gene uncharacterized LOC119871967 Neighboring gene ACD shelterin complex subunit and telomerase recruitment factor Neighboring gene RHO family interacting cell polarization regulator 1 Neighboring gene uncharacterized LOC106558863 Neighboring gene agouti related neuropeptide

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcriptional repressor CTCF

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051809.1 Reference ROS_Cfam_1.0

    Range
    82243654..82298999 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038667320.1 → XP_038523248.1  transcriptional repressor CTCF isoform X5

    Related
    ENSCAFP00845010264.1, ENSCAFT00845013208.1
    Conserved Domains (4) summary
    COG5048
    Location:366 → 500
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:268 → 288
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:280 → 305
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:351 → 375
    zf-H2C2_5; C2H2-type zinc-finger domain

  2. XM_038667321.1 → XP_038523249.1  transcriptional repressor CTCF isoform X5

    Conserved Domains (4) summary
    COG5048
    Location:366 → 500
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:268 → 288
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:280 → 305
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:351 → 375
    zf-H2C2_5; C2H2-type zinc-finger domain

  3. XM_038667316.1 → XP_038523244.1  transcriptional repressor CTCF isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:374 → 508
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:276 → 296
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:288 → 313
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:359 → 383
    zf-H2C2_5; C2H2-type zinc-finger domain

  4. XM_038667318.1 → XP_038523246.1  transcriptional repressor CTCF isoform X3

    Conserved Domains (4) summary
    COG5048
    Location:374 → 508
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:276 → 296
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:288 → 313
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:359 → 383
    zf-H2C2_5; C2H2-type zinc-finger domain

  5. XM_038667317.1 → XP_038523245.1  transcriptional repressor CTCF isoform X2

    Conserved Domains (4) summary
    COG5048
    Location:374 → 508
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:276 → 296
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:288 → 313
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:359 → 383
    zf-H2C2_5; C2H2-type zinc-finger domain

  6. XM_038667319.1 → XP_038523247.1  transcriptional repressor CTCF isoform X4

    Related
    ENSCAFP00845010214.1, ENSCAFT00845013129.1
    Conserved Domains (4) summary
    COG5048
    Location:374 → 508
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:276 → 296
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:288 → 313
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:359 → 383
    zf-H2C2_5; C2H2-type zinc-finger domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049265.1 Alternate UMICH_Zoey_3.1

    Range
    82069946..82125241 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038477389.1 → XP_038333317.1  transcriptional repressor CTCF isoform X5

    Conserved Domains (4) summary
    COG5048
    Location:366 → 500
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:268 → 288
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:280 → 305
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:351 → 375
    zf-H2C2_5; C2H2-type zinc-finger domain

  2. XM_038477390.1 → XP_038333318.1  transcriptional repressor CTCF isoform X5

    Conserved Domains (4) summary
    COG5048
    Location:366 → 500
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:268 → 288
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:280 → 305
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:351 → 375
    zf-H2C2_5; C2H2-type zinc-finger domain

  3. XM_038477385.1 → XP_038333313.1  transcriptional repressor CTCF isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:374 → 508
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:276 → 296
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:288 → 313
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:359 → 383
    zf-H2C2_5; C2H2-type zinc-finger domain

  4. XM_038477387.1 → XP_038333315.1  transcriptional repressor CTCF isoform X3

    Conserved Domains (4) summary
    COG5048
    Location:374 → 508
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:276 → 296
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:288 → 313
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:359 → 383
    zf-H2C2_5; C2H2-type zinc-finger domain

  5. XM_038477386.1 → XP_038333314.1  transcriptional repressor CTCF isoform X2

    Conserved Domains (4) summary
    COG5048
    Location:374 → 508
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:276 → 296
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:288 → 313
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:359 → 383
    zf-H2C2_5; C2H2-type zinc-finger domain

  6. XM_038477388.1 → XP_038333316.1  transcriptional repressor CTCF isoform X4

    Conserved Domains (4) summary
    COG5048
    Location:374 → 508
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:276 → 296
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:288 → 313
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:359 → 383
    zf-H2C2_5; C2H2-type zinc-finger domain

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049746.1 Alternate UNSW_CanFamBas_1.0

    Range
    81751450..81806353 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038602711.1 → XP_038458639.1  transcriptional repressor CTCF isoform X5

    Conserved Domains (4) summary
    COG5048
    Location:366 → 500
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:268 → 288
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:280 → 305
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:351 → 375
    zf-H2C2_5; C2H2-type zinc-finger domain

  2. XM_038602712.1 → XP_038458640.1  transcriptional repressor CTCF isoform X5

    Conserved Domains (4) summary
    COG5048
    Location:366 → 500
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:268 → 288
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:280 → 305
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:351 → 375
    zf-H2C2_5; C2H2-type zinc-finger domain

  3. XM_038602707.1 → XP_038458635.1  transcriptional repressor CTCF isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:374 → 508
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:276 → 296
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:288 → 313
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:359 → 383
    zf-H2C2_5; C2H2-type zinc-finger domain

  4. XM_038602709.1 → XP_038458637.1  transcriptional repressor CTCF isoform X3

    Conserved Domains (4) summary
    COG5048
    Location:374 → 508
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:276 → 296
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:288 → 313
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:359 → 383
    zf-H2C2_5; C2H2-type zinc-finger domain

  5. XM_038602708.1 → XP_038458636.1  transcriptional repressor CTCF isoform X2

    Conserved Domains (4) summary
    COG5048
    Location:374 → 508
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:276 → 296
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:288 → 313
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:359 → 383
    zf-H2C2_5; C2H2-type zinc-finger domain

  6. XM_038602710.1 → XP_038458638.1  transcriptional repressor CTCF isoform X4

    Conserved Domains (4) summary
    COG5048
    Location:374 → 508
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:276 → 296
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:288 → 313
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:359 → 383
    zf-H2C2_5; C2H2-type zinc-finger domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049226.1 Alternate UU_Cfam_GSD_1.0

    Range
    82394029..82449348 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038538596.1 → XP_038394524.1  transcriptional repressor CTCF isoform X5

    Conserved Domains (4) summary
    COG5048
    Location:366 → 500
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:268 → 288
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:280 → 305
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:351 → 375
    zf-H2C2_5; C2H2-type zinc-finger domain

  2. XM_038538597.1 → XP_038394525.1  transcriptional repressor CTCF isoform X5

    Conserved Domains (4) summary
    COG5048
    Location:366 → 500
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:268 → 288
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:280 → 305
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:351 → 375
    zf-H2C2_5; C2H2-type zinc-finger domain

  3. XM_038538591.1 → XP_038394519.1  transcriptional repressor CTCF isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:374 → 508
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:276 → 296
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:288 → 313
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:359 → 383
    zf-H2C2_5; C2H2-type zinc-finger domain

  4. XM_038538593.1 → XP_038394521.1  transcriptional repressor CTCF isoform X3

    Conserved Domains (4) summary
    COG5048
    Location:374 → 508
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:276 → 296
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:288 → 313
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:359 → 383
    zf-H2C2_5; C2H2-type zinc-finger domain

  5. XM_038538592.1 → XP_038394520.1  transcriptional repressor CTCF isoform X2

    Conserved Domains (4) summary
    COG5048
    Location:374 → 508
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:276 → 296
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:288 → 313
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:359 → 383
    zf-H2C2_5; C2H2-type zinc-finger domain

  6. XM_038538595.1 → XP_038394523.1  transcriptional repressor CTCF isoform X4

    Conserved Domains (4) summary
    COG5048
    Location:374 → 508
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:276 → 296
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:288 → 313
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:359 → 383
    zf-H2C2_5; C2H2-type zinc-finger domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006587.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    81798220..81853471 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038530200.1 → XP_038386128.1  transcriptional repressor CTCF isoform X5

    Conserved Domains (4) summary
    COG5048
    Location:366 → 500
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:268 → 288
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:280 → 305
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:351 → 375
    zf-H2C2_5; C2H2-type zinc-finger domain

  2. XM_038530206.1 → XP_038386134.1  transcriptional repressor CTCF isoform X5

    Conserved Domains (4) summary
    COG5048
    Location:366 → 500
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:268 → 288
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:280 → 305
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:351 → 375
    zf-H2C2_5; C2H2-type zinc-finger domain

  3. XM_038530173.1 → XP_038386101.1  transcriptional repressor CTCF isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:374 → 508
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:276 → 296
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:288 → 313
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:359 → 383
    zf-H2C2_5; C2H2-type zinc-finger domain

  4. XM_038530186.1 → XP_038386114.1  transcriptional repressor CTCF isoform X3

    Conserved Domains (4) summary
    COG5048
    Location:374 → 508
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:276 → 296
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:288 → 313
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:359 → 383
    zf-H2C2_5; C2H2-type zinc-finger domain

  5. XM_014114086.3 → XP_013969561.1  transcriptional repressor CTCF isoform X2

    Conserved Domains (4) summary
    COG5048
    Location:374 → 508
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:276 → 296
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:288 → 313
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:359 → 383
    zf-H2C2_5; C2H2-type zinc-finger domain

  6. XM_014114087.3 → XP_013969562.1  transcriptional repressor CTCF isoform X4

    Conserved Domains (4) summary
    COG5048
    Location:374 → 508
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:276 → 296
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:288 → 313
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:359 → 383
    zf-H2C2_5; C2H2-type zinc-finger domain
Nucleotide Protein
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