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SDF4 stromal cell derived factor 4 [ Canis lupus familiaris (dog) ]

Gene ID: 479572, updated on 5-Mar-2024

Summary

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Official Symbol
SDF4provided by VGNC
Official Full Name
stromal cell derived factor 4provided by VGNC
Primary source
VGNC:VGNC:45948
See related
Ensembl:ENSCAFG00845023000
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 5 NC_051809.1 (56610405..56624414, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 5 NC_006587.4 (56484483..56498492, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 5 NC_049226.1 (56883417..56897430, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 5 NC_049265.1 (56601139..56615150, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 5 NC_049746.1 (56493416..56507429, complement)

Chromosome 5 - NC_051809.1Genomic Context describing neighboring genes Neighboring gene TNF receptor superfamily member 18 Neighboring gene TNF receptor superfamily member 4 Neighboring gene beta-1,3-galactosyltransferase 6 Neighboring gene uncharacterized LOC119871889 Neighboring gene C1q and TNF related 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A cytosolic splice variant of Cab45 interacts with Munc18b and impacts on amylase secretion by pancreatic acini. Lam PP, et al. Mol Biol Cell, 2007 Jul. PMID 17442889, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium-ion regulated exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
45 kDa calcium-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051809.1 Reference ROS_Cfam_1.0

    Range
    56610405..56624414 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038666301.1 → XP_038522229.1  45 kDa calcium-binding protein

    UniProtKB/TrEMBL
    A0A8C0KC52, A0A8C0LTK1, A0A8I3PU05, A0A8P0NMK2
    Conserved Domains (1) summary
    cd16225
    Location:60 → 340
    EFh_CREC_cab45; EF-hand, calcium binding motif, found in 45 kDa calcium-binding protein (Cab45)

  2. XM_038666303.1 → XP_038522231.1  45 kDa calcium-binding protein

    UniProtKB/TrEMBL
    A0A8C0KC52, A0A8C0LTK1, A0A8I3PU05, A0A8P0NMK2
    Conserved Domains (1) summary
    cd16225
    Location:60 → 340
    EFh_CREC_cab45; EF-hand, calcium binding motif, found in 45 kDa calcium-binding protein (Cab45)

  3. XM_038666302.1 → XP_038522230.1  45 kDa calcium-binding protein

    UniProtKB/TrEMBL
    A0A8C0KC52, A0A8C0LTK1, A0A8I3PU05, A0A8P0NMK2
    Conserved Domains (1) summary
    cd16225
    Location:60 → 340
    EFh_CREC_cab45; EF-hand, calcium binding motif, found in 45 kDa calcium-binding protein (Cab45)

  4. XM_038666304.1 → XP_038522232.1  45 kDa calcium-binding protein

    UniProtKB/TrEMBL
    A0A8C0KC52, A0A8C0LTK1, A0A8I3PU05, A0A8P0NMK2
    Related
    ENSCAFP00845031777.1, ENSCAFT00845040597.1
    Conserved Domains (1) summary
    cd16225
    Location:60 → 340
    EFh_CREC_cab45; EF-hand, calcium binding motif, found in 45 kDa calcium-binding protein (Cab45)

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049265.1 Alternate UMICH_Zoey_3.1

    Range
    56601139..56615150 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038476427.1 → XP_038332355.1  45 kDa calcium-binding protein

    Conserved Domains (1) summary
    cd16225
    Location:60 → 340
    EFh_CREC_cab45; EF-hand, calcium binding motif, found in 45 kDa calcium-binding protein (Cab45)

  2. XM_038476429.1 → XP_038332357.1  45 kDa calcium-binding protein

    Conserved Domains (1) summary
    cd16225
    Location:60 → 340
    EFh_CREC_cab45; EF-hand, calcium binding motif, found in 45 kDa calcium-binding protein (Cab45)

  3. XM_038476428.1 → XP_038332356.1  45 kDa calcium-binding protein

    Conserved Domains (1) summary
    cd16225
    Location:60 → 340
    EFh_CREC_cab45; EF-hand, calcium binding motif, found in 45 kDa calcium-binding protein (Cab45)

  4. XM_038476430.1 → XP_038332358.1  45 kDa calcium-binding protein

    Conserved Domains (1) summary
    cd16225
    Location:60 → 340
    EFh_CREC_cab45; EF-hand, calcium binding motif, found in 45 kDa calcium-binding protein (Cab45)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049746.1 Alternate UNSW_CanFamBas_1.0

    Range
    56493416..56507429 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038601732.1 → XP_038457660.1  45 kDa calcium-binding protein

    Conserved Domains (1) summary
    cd16225
    Location:60 → 340
    EFh_CREC_cab45; EF-hand, calcium binding motif, found in 45 kDa calcium-binding protein (Cab45)

  2. XM_038601734.1 → XP_038457662.1  45 kDa calcium-binding protein

    Conserved Domains (1) summary
    cd16225
    Location:60 → 340
    EFh_CREC_cab45; EF-hand, calcium binding motif, found in 45 kDa calcium-binding protein (Cab45)

  3. XM_038601733.1 → XP_038457661.1  45 kDa calcium-binding protein

    Conserved Domains (1) summary
    cd16225
    Location:60 → 340
    EFh_CREC_cab45; EF-hand, calcium binding motif, found in 45 kDa calcium-binding protein (Cab45)

  4. XM_038601735.1 → XP_038457663.1  45 kDa calcium-binding protein

    Conserved Domains (1) summary
    cd16225
    Location:60 → 340
    EFh_CREC_cab45; EF-hand, calcium binding motif, found in 45 kDa calcium-binding protein (Cab45)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049226.1 Alternate UU_Cfam_GSD_1.0

    Range
    56883417..56897430 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038537574.1 → XP_038393502.1  45 kDa calcium-binding protein

    UniProtKB/TrEMBL
    A0A8C0KC52, A0A8C0LTK1, A0A8I3PU05, A0A8P0NMK2
    Conserved Domains (1) summary
    cd16225
    Location:60 → 340
    EFh_CREC_cab45; EF-hand, calcium binding motif, found in 45 kDa calcium-binding protein (Cab45)

  2. XM_038537576.1 → XP_038393504.1  45 kDa calcium-binding protein

    UniProtKB/TrEMBL
    A0A8C0KC52, A0A8C0LTK1, A0A8I3PU05, A0A8P0NMK2
    Conserved Domains (1) summary
    cd16225
    Location:60 → 340
    EFh_CREC_cab45; EF-hand, calcium binding motif, found in 45 kDa calcium-binding protein (Cab45)

  3. XM_038537575.1 → XP_038393503.1  45 kDa calcium-binding protein

    UniProtKB/TrEMBL
    A0A8C0KC52, A0A8C0LTK1, A0A8I3PU05, A0A8P0NMK2
    Conserved Domains (1) summary
    cd16225
    Location:60 → 340
    EFh_CREC_cab45; EF-hand, calcium binding motif, found in 45 kDa calcium-binding protein (Cab45)

  4. XM_038537577.1 → XP_038393505.1  45 kDa calcium-binding protein

    UniProtKB/TrEMBL
    A0A8C0KC52, A0A8C0LTK1, A0A8I3PU05, A0A8P0NMK2
    Conserved Domains (1) summary
    cd16225
    Location:60 → 340
    EFh_CREC_cab45; EF-hand, calcium binding motif, found in 45 kDa calcium-binding protein (Cab45)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006587.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    56484483..56498492 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_536712.6 → XP_536712.3  45 kDa calcium-binding protein

    See identical proteins and their annotated locations for XP_536712.3

    UniProtKB/TrEMBL
    A0A8C0KC52, A0A8C0LTK1, A0A8I3PU05, A0A8P0NMK2
    Conserved Domains (1) summary
    cd16225
    Location:60 → 340
    EFh_CREC_cab45; EF-hand, calcium binding motif, found in 45 kDa calcium-binding protein (Cab45)

  2. XM_005620372.4 → XP_005620429.1  45 kDa calcium-binding protein

    See identical proteins and their annotated locations for XP_005620429.1

    UniProtKB/TrEMBL
    A0A8C0KC52, A0A8C0LTK1, A0A8I3PU05, A0A8P0NMK2
    Conserved Domains (1) summary
    cd16225
    Location:60 → 340
    EFh_CREC_cab45; EF-hand, calcium binding motif, found in 45 kDa calcium-binding protein (Cab45)

  3. XM_005620370.4 → XP_005620427.1  45 kDa calcium-binding protein

    See identical proteins and their annotated locations for XP_005620427.1

    UniProtKB/TrEMBL
    A0A8C0KC52, A0A8C0LTK1, A0A8I3PU05, A0A8P0NMK2
    Conserved Domains (1) summary
    cd16225
    Location:60 → 340
    EFh_CREC_cab45; EF-hand, calcium binding motif, found in 45 kDa calcium-binding protein (Cab45)

  4. XM_022418890.2 → XP_022274598.1  45 kDa calcium-binding protein

    UniProtKB/TrEMBL
    A0A8C0KC52, A0A8C0LTK1, A0A8I3PU05, A0A8P0NMK2
    Conserved Domains (1) summary
    cd16225
    Location:60 → 340
    EFh_CREC_cab45; EF-hand, calcium binding motif, found in 45 kDa calcium-binding protein (Cab45)
Nucleotide Protein
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