CWC27 CWC27 spliceosome associated cyclophilin [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: CWC27provided by VGNC
Official Full Name: CWC27 spliceosome associated cyclophilinprovided by VGNC
Primary source: VGNC:VGNC:39743
See related: Ensembl:ENSCAFG00845009267
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as: SDCCAG10
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 2

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	2	NC_051806.1 (51139348..51338035)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	2	NC_006584.4 (47611670..47803392)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	2	NC_049223.1 (49883229..50075682)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	2	NC_049262.1 (48199895..48392787)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	2	NC_049743.1 (48995827..49187890)

Chromosome 2 - NC_051806.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

BAC_375-O17 (e-PCR)
- UniSTS:262395

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables peptidyl-prolyl cis-trans isomerase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in protein folding	IEA Inferred from Electronic Annotation more info	PubMed
involved_in protein peptidyl-prolyl isomerization	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of catalytic step 2 spliceosome	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: spliceosome-associated protein CWC27 homolog

Names: CWC27 spliceosome associated protein homolog; serologically defined colon cancer antigen 10

XP_038325829.1

EC 5.2.1.8

XP_038386639.1

EC 5.2.1.8

XP_038450864.1

EC 5.2.1.8

XP_038514934.1

EC 5.2.1.8

XP_860809.2

EC 5.2.1.8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051806.1 Reference ROS_Cfam_1.0

Range

51139348..51338035

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038659006.1 → XP_038514934.1 spliceosome-associated protein CWC27 homolog

UniProtKB/TrEMBL

A0A8C0RWK7, A0A8I3NB38, A0A8I3NDJ6

Related

ENSCAFP00845012746.1, ENSCAFT00845016386.1

Conserved Domains (3) summary

cd01925
Location:8 → 177

cyclophilin_CeCYP16-like; cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase ...

pfam17380
Location:314 → 471

DUF5401; Family of unknown function (DUF5401)

cd22288
Location:375 → 427

CWC27_CTD; C-terminal domain of spliceosome-associated protein CWC27 and similar proteins

Alternate UMICH_Zoey_3.1

Genomic

NC_049262.1 Alternate UMICH_Zoey_3.1

Range

48199895..48392787

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038469901.1 → XP_038325829.1 spliceosome-associated protein CWC27 homolog

Conserved Domains (3) summary

cd01925
Location:8 → 177

cyclophilin_CeCYP16-like; cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase ...

pfam17380
Location:314 → 471

DUF5401; Family of unknown function (DUF5401)

cd22288
Location:375 → 427

CWC27_CTD; C-terminal domain of spliceosome-associated protein CWC27 and similar proteins

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049743.1 Alternate UNSW_CanFamBas_1.0

Range

48995827..49187890

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038594936.1 → XP_038450864.1 spliceosome-associated protein CWC27 homolog

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049223.1 Alternate UU_Cfam_GSD_1.0

Range

49883229..50075682

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038530711.1 → XP_038386639.1 spliceosome-associated protein CWC27 homolog

UniProtKB/TrEMBL

A0A8C0M3D7, A0A8P0N9N7, A0A8P0TA26

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006584.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

47611670..47803392

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_855716.6 → XP_860809.2 spliceosome-associated protein CWC27 homolog

UniProtKB/TrEMBL

A0A8C0M3D7, A0A8P0N9N7, A0A8P0TA26

Conserved Domains (2) summary

cd01925
Location:8 → 177

cyclophilin_CeCYP16-like; cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced ...

cl26511
Location:268 → 470

Neuromodulin_N; Gap junction protein N-terminal region