RBP4 retinol binding protein 4 [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: RBP4provided by VGNC
Official Full Name: retinol binding protein 4provided by VGNC
Primary source: VGNC:VGNC:45432
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 28

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	28	NC_051832.1 (8083216..8090965, complement)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	28	NC_006610.4 (7999367..8007133, complement)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	28	NC_049249.1 (8002083..8009832, complement)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	28	NC_049288.1 (7802939..7810708, complement)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	28	NC_049769.1 (7832158..7839906, complement)

Chromosome 28 - NC_051832.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

canine congenital eye malformations, caused by an amino acid deletion (K12del) near the N terminus of retinol-binding protein (RBP4), are reported.
Title: Maternal Inheritance of a Recessive RBP4 Defect in Canine Congenital Eye Disease.

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Markers

RBP4 (e-PCR)
- UniSTS:254003

RBP4-1 (e-PCR)
- UniSTS:254003

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables retinol binding	IEA Inferred from Electronic Annotation more info	PubMed
enables retinol transmembrane transporter activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in retinol transport	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in extracellular space	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: retinol-binding protein 4

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051832.1 Reference ROS_Cfam_1.0

Range

8083216..8090965 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038439954.1 → XP_038295882.1 retinol-binding protein 4

Conserved Domains (1) summary

cd00743
Location:22 → 192

lipocalin_RBP_like; retinol-binding protein 4 and similar proteins

Alternate UMICH_Zoey_3.1

Genomic

NC_049288.1 Alternate UMICH_Zoey_3.1

Range

7802939..7810708 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038514567.1 → XP_038370495.1 retinol-binding protein 4

Conserved Domains (1) summary

cd00743
Location:22 → 192

lipocalin_RBP_like; retinol-binding protein 4 and similar proteins

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049769.1 Alternate UNSW_CanFamBas_1.0

Range

7832158..7839906 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038642378.1 → XP_038498306.1 retinol-binding protein 4

Conserved Domains (1) summary

cd00743
Location:22 → 192

lipocalin_RBP_like; retinol-binding protein 4 and similar proteins

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049249.1 Alternate UU_Cfam_GSD_1.0

Range

8002083..8009832 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038578212.1 → XP_038434140.1 retinol-binding protein 4

Conserved Domains (1) summary

cd00743
Location:22 → 192

lipocalin_RBP_like; retinol-binding protein 4 and similar proteins

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006610.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

7999367..8007133 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_534969.7 → XP_534969.3 retinol-binding protein 4

Conserved Domains (1) summary

cd00743
Location:22 → 192

lipocalin_RBP_like; retinol-binding protein 4 and similar proteins