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ZCRB1 zinc finger CCHC-type and RNA binding motif containing 1 [ Canis lupus familiaris (dog) ]

Gene ID: 477640, updated on 5-Mar-2024

Summary

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Official Symbol
ZCRB1provided by VGNC
Official Full Name
zinc finger CCHC-type and RNA binding motif containing 1provided by VGNC
Primary source
VGNC:VGNC:48574
See related
Ensembl:ENSCAFG00845030305
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 27
Exon count:
8
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 27 NC_051831.1 (11786482..11801404)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 27 NC_006609.4 (34698316..34713224, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 27 NC_049248.1 (34943879..34959060, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 27 NC_049287.1 (11604795..11619702)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 27 NC_049768.1 (11628882..11643802)

Chromosome 27 - NC_051831.1Genomic Context describing neighboring genes Neighboring gene prickle planar cell polarity protein 1 Neighboring gene uncharacterized LOC119866396 Neighboring gene periphilin 1 Neighboring gene uncharacterized LOC119866397 Neighboring gene YY1 associated factor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger CCHC-type and RNA-binding motif-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051831.1 Reference ROS_Cfam_1.0

    Range
    11786482..11801404
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038438493.1 → XP_038294421.1  zinc finger CCHC-type and RNA-binding motif-containing protein 1 isoform X2

    Conserved Domains (2) summary
    PTZ00368
    Location:64 → 90
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
    cl17169
    Location:6 → 51
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_038438492.1 → XP_038294420.1  zinc finger CCHC-type and RNA-binding motif-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0QYV2, A0A8C0RPR2, A0A8I3Q3S8
    Related
    ENSCAFP00845042266.1, ENSCAFT00845053780.1
    Conserved Domains (2) summary
    PTZ00368
    Location:97 → 123
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
    cd12393
    Location:9 → 84
    RRM_ZCRB1; RNA recognition motif (RRM) found in Zinc finger CCHC-type and RNA-binding motif-containing protein 1 (ZCRB1) and similar proteins

  3. XM_038438494.1 → XP_038294422.1  zinc finger CCHC-type and RNA-binding motif-containing protein 1 isoform X3

    Conserved Domains (2) summary
    PTZ00368
    Location:56 → 82
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
    cl17169
    Location:1 → 43
    RRM_SF; RNA recognition motif (RRM) superfamily

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049287.1 Alternate UMICH_Zoey_3.1

    Range
    11604795..11619702
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038513179.1 → XP_038369107.1  zinc finger CCHC-type and RNA-binding motif-containing protein 1 isoform X2

    Conserved Domains (2) summary
    PTZ00368
    Location:64 → 90
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
    cl17169
    Location:6 → 51
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_038513178.1 → XP_038369106.1  zinc finger CCHC-type and RNA-binding motif-containing protein 1 isoform X1

    Conserved Domains (2) summary
    PTZ00368
    Location:97 → 123
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
    cd12393
    Location:9 → 84
    RRM_ZCRB1; RNA recognition motif (RRM) found in Zinc finger CCHC-type and RNA-binding motif-containing protein 1 (ZCRB1) and similar proteins

  3. XM_038513180.1 → XP_038369108.1  zinc finger CCHC-type and RNA-binding motif-containing protein 1 isoform X3

    Conserved Domains (2) summary
    PTZ00368
    Location:56 → 82
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
    cl17169
    Location:1 → 43
    RRM_SF; RNA recognition motif (RRM) superfamily

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049768.1 Alternate UNSW_CanFamBas_1.0

    Range
    11628882..11643802
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038640956.1 → XP_038496884.1  zinc finger CCHC-type and RNA-binding motif-containing protein 1 isoform X2

    Conserved Domains (2) summary
    PTZ00368
    Location:64 → 90
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
    cl17169
    Location:6 → 51
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_038640955.1 → XP_038496883.1  zinc finger CCHC-type and RNA-binding motif-containing protein 1 isoform X1

    Conserved Domains (2) summary
    PTZ00368
    Location:97 → 123
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
    cd12393
    Location:9 → 84
    RRM_ZCRB1; RNA recognition motif (RRM) found in Zinc finger CCHC-type and RNA-binding motif-containing protein 1 (ZCRB1) and similar proteins

  3. XM_038640957.1 → XP_038496885.1  zinc finger CCHC-type and RNA-binding motif-containing protein 1 isoform X3

    Conserved Domains (2) summary
    PTZ00368
    Location:56 → 82
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
    cl17169
    Location:1 → 43
    RRM_SF; RNA recognition motif (RRM) superfamily

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049248.1 Alternate UU_Cfam_GSD_1.0

    Range
    34943879..34959060 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038577374.1 → XP_038433302.1  zinc finger CCHC-type and RNA-binding motif-containing protein 1 isoform X2

    Conserved Domains (2) summary
    PTZ00368
    Location:64 → 90
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
    cl17169
    Location:6 → 51
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_038577375.1 → XP_038433303.1  zinc finger CCHC-type and RNA-binding motif-containing protein 1 isoform X3

    Conserved Domains (2) summary
    PTZ00368
    Location:56 → 82
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
    cl17169
    Location:1 → 43
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_038577373.1 → XP_038433301.1  zinc finger CCHC-type and RNA-binding motif-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0QYV2, A0A8C0RPR2, A0A8I3Q3S8
    Conserved Domains (2) summary
    PTZ00368
    Location:97 → 123
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
    cd12393
    Location:9 → 84
    RRM_ZCRB1; RNA recognition motif (RRM) found in Zinc finger CCHC-type and RNA-binding motif-containing protein 1 (ZCRB1) and similar proteins

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006609.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    34698316..34713224 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038459998.1 → XP_038315926.1  zinc finger CCHC-type and RNA-binding motif-containing protein 1 isoform X2

    Conserved Domains (2) summary
    PTZ00368
    Location:64 → 90
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
    cl17169
    Location:6 → 51
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_014108520.2 → XP_013963995.1  zinc finger CCHC-type and RNA-binding motif-containing protein 1 isoform X3

    Conserved Domains (2) summary
    PTZ00368
    Location:56 → 82
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
    cl17169
    Location:1 → 43
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_534835.5 → XP_534835.1  zinc finger CCHC-type and RNA-binding motif-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0QYV2, A0A8C0RPR2, A0A8I3Q3S8
    Conserved Domains (2) summary
    PTZ00368
    Location:97 → 123
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
    cd12393
    Location:9 → 84
    RRM_ZCRB1; RNA recognition motif (RRM) found in Zinc finger CCHC-type and RNA-binding motif-containing protein 1 (ZCRB1) and similar proteins
Nucleotide Protein
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