U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PDCD2 programmed cell death 2 [ Canis lupus familiaris (dog) ]

Gene ID: 475041, updated on 5-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
PDCD2provided by VGNC
Official Full Name
programmed cell death 2provided by VGNC
Primary source
VGNC:VGNC:44337
See related
Ensembl:ENSCAFG00845023205
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 12
Exon count:
6
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 12 NC_051816.1 (73467974..73473935, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 12 NC_006594.4 (72244947..72250909, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 12 NC_049233.1 (72953917..72959885, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 12 NC_049272.1 (72740466..72746423, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 12 NC_049753.1 (72562886..72568846, complement)

Chromosome 12 - NC_051816.1Genomic Context describing neighboring genes Neighboring gene proteasome 20S subunit beta 1 Neighboring gene translation initiation factor IF-2-like Neighboring gene TATA-box binding protein

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
programmed cell death protein 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051816.1 Reference ROS_Cfam_1.0

    Range
    73467974..73473935 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038684465.1 → XP_038540393.1  programmed cell death protein 2

    UniProtKB/TrEMBL
    A0A8C0SDV3, A0A8C0SFA4, A0A8I3PIM7, A0A8P0SV17
    Related
    ENSCAFP00845032292.1, ENSCAFT00845041200.1
    Conserved Domains (2) summary
    pfam01753
    Location:135 → 172
    zf-MYND; MYND finger
    pfam04194
    Location:223 → 338
    PDCD2_C; Programmed cell death protein 2, C-terminal putative domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049272.1 Alternate UMICH_Zoey_3.1

    Range
    72740466..72746423 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038492719.1 → XP_038348647.1  programmed cell death protein 2

    Conserved Domains (2) summary
    pfam01753
    Location:135 → 172
    zf-MYND; MYND finger
    pfam04194
    Location:223 → 338
    PDCD2_C; Programmed cell death protein 2, C-terminal putative domain

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049753.1 Alternate UNSW_CanFamBas_1.0

    Range
    72562886..72568846 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038618906.1 → XP_038474834.1  programmed cell death protein 2

    Conserved Domains (2) summary
    pfam01753
    Location:135 → 172
    zf-MYND; MYND finger
    pfam04194
    Location:223 → 338
    PDCD2_C; Programmed cell death protein 2, C-terminal putative domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049233.1 Alternate UU_Cfam_GSD_1.0

    Range
    72953917..72959885 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038555036.1 → XP_038410964.1  programmed cell death protein 2

    UniProtKB/TrEMBL
    A0A8C0SDV3, A0A8C0SFA4, A0A8I3PIM7, A0A8P0SV17
    Conserved Domains (2) summary
    pfam01753
    Location:135 → 172
    zf-MYND; MYND finger
    pfam04194
    Location:223 → 338
    PDCD2_C; Programmed cell death protein 2, C-terminal putative domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006594.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    72244947..72250909 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_849449.6 → XP_854542.1  programmed cell death protein 2

    UniProtKB/TrEMBL
    A0A8C0SDV3, A0A8C0SFA4, A0A8I3PIM7, A0A8P0SV17
    Conserved Domains (2) summary
    pfam01753
    Location:135 → 172
    zf-MYND; MYND finger
    pfam04194
    Location:223 → 338
    PDCD2_C; Programmed cell death protein 2, C-terminal putative domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Miscellaneous