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RMND5B required for meiotic nuclear division 5 homolog B [ Canis lupus familiaris (dog) ]

Gene ID: 474643, updated on 5-Mar-2024

Summary

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Official Symbol
RMND5Bprovided by VGNC
Official Full Name
required for meiotic nuclear division 5 homolog Bprovided by VGNC
Primary source
VGNC:VGNC:45611
See related
Ensembl:ENSCAFG00845010127
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
12
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 11 NC_051815.1 (3369565..3385207, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 11 NC_006593.4 (3536826..3552462, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 11 NC_049232.1 (3659857..3675496, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 11 NC_049271.1 (3338093..3353733, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 11 NC_049752.1 (3417690..3433333, complement)

Chromosome 11 - NC_051815.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111097980 Neighboring gene NHP2 ribonucleoprotein Neighboring gene NEDD4 binding protein 3 Neighboring gene beta-1,4-galactosyltransferase 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of GID complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein RMD5 homolog B; E3 ubiquitin-protein transferase RMND5B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051815.1 Reference ROS_Cfam_1.0

    Range
    3369565..3385207 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038681168.1 → XP_038537096.1  E3 ubiquitin-protein transferase RMND5B isoform X1

    UniProtKB/TrEMBL
    A0A8C0S8N4, A0A8I3N9T8, A0A8I3NCK1, A0A8P0N3I4
    Related
    ENSCAFP00845013926.1, ENSCAFT00845017880.1
    Conserved Domains (2) summary
    COG5109
    Location:60 → 393
    COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam10607
    Location:155 → 299
    CLTH; CTLH/CRA C-terminal to LisH motif domain

  2. XM_038681167.1 → XP_038537095.1  E3 ubiquitin-protein transferase RMND5B isoform X1

    UniProtKB/TrEMBL
    A0A8C0S8N4, A0A8I3N9T8, A0A8I3NCK1, A0A8P0N3I4
    Related
    ENSCAFP00845013887.1, ENSCAFT00845017828.1
    Conserved Domains (2) summary
    COG5109
    Location:60 → 393
    COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam10607
    Location:155 → 299
    CLTH; CTLH/CRA C-terminal to LisH motif domain

  3. XM_038681169.1 → XP_038537097.1  E3 ubiquitin-protein transferase RMND5B isoform X2

    UniProtKB/TrEMBL
    A0A8I3N9T8, A0A8P0N3I4
    Conserved Domains (2) summary
    COG5109
    Location:2 → 333
    COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam10607
    Location:95 → 239
    CLTH; CTLH/CRA C-terminal to LisH motif domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049271.1 Alternate UMICH_Zoey_3.1

    Range
    3338093..3353733 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038489773.1 → XP_038345701.1  E3 ubiquitin-protein transferase RMND5B isoform X1

    Conserved Domains (2) summary
    COG5109
    Location:60 → 393
    COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam10607
    Location:155 → 299
    CLTH; CTLH/CRA C-terminal to LisH motif domain

  2. XM_038489772.1 → XP_038345700.1  E3 ubiquitin-protein transferase RMND5B isoform X1

    Conserved Domains (2) summary
    COG5109
    Location:60 → 393
    COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam10607
    Location:155 → 299
    CLTH; CTLH/CRA C-terminal to LisH motif domain

  3. XM_038489774.1 → XP_038345702.1  E3 ubiquitin-protein transferase RMND5B isoform X2

    Conserved Domains (2) summary
    COG5109
    Location:2 → 333
    COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam10607
    Location:95 → 239
    CLTH; CTLH/CRA C-terminal to LisH motif domain

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049752.1 Alternate UNSW_CanFamBas_1.0

    Range
    3417690..3433333 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038615699.1 → XP_038471627.1  E3 ubiquitin-protein transferase RMND5B isoform X1

    Conserved Domains (2) summary
    COG5109
    Location:60 → 393
    COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam10607
    Location:155 → 299
    CLTH; CTLH/CRA C-terminal to LisH motif domain

  2. XM_038615698.1 → XP_038471626.1  E3 ubiquitin-protein transferase RMND5B isoform X1

    Conserved Domains (2) summary
    COG5109
    Location:60 → 393
    COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam10607
    Location:155 → 299
    CLTH; CTLH/CRA C-terminal to LisH motif domain

  3. XM_038615700.1 → XP_038471628.1  E3 ubiquitin-protein transferase RMND5B isoform X2

    Conserved Domains (2) summary
    COG5109
    Location:2 → 333
    COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam10607
    Location:95 → 239
    CLTH; CTLH/CRA C-terminal to LisH motif domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049232.1 Alternate UU_Cfam_GSD_1.0

    Range
    3659857..3675496 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038551811.1 → XP_038407739.1  E3 ubiquitin-protein transferase RMND5B isoform X1

    UniProtKB/TrEMBL
    A0A8C0S8N4, A0A8I3N9T8, A0A8I3NCK1, A0A8P0N3I4
    Conserved Domains (2) summary
    COG5109
    Location:60 → 393
    COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam10607
    Location:155 → 299
    CLTH; CTLH/CRA C-terminal to LisH motif domain

  2. XM_038551810.1 → XP_038407738.1  E3 ubiquitin-protein transferase RMND5B isoform X1

    UniProtKB/TrEMBL
    A0A8C0S8N4, A0A8I3N9T8, A0A8I3NCK1, A0A8P0N3I4
    Conserved Domains (2) summary
    COG5109
    Location:60 → 393
    COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam10607
    Location:155 → 299
    CLTH; CTLH/CRA C-terminal to LisH motif domain

  3. XM_038551812.1 → XP_038407740.1  E3 ubiquitin-protein transferase RMND5B isoform X2

    UniProtKB/TrEMBL
    A0A8I3N9T8, A0A8P0N3I4
    Conserved Domains (2) summary
    COG5109
    Location:2 → 333
    COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam10607
    Location:95 → 239
    CLTH; CTLH/CRA C-terminal to LisH motif domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006593.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    3536826..3552462 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005626313.4 → XP_005626370.1  E3 ubiquitin-protein transferase RMND5B isoform X1

    See identical proteins and their annotated locations for XP_005626370.1

    UniProtKB/TrEMBL
    A0A8C0S8N4, A0A8I3N9T8, A0A8I3NCK1, A0A8P0N3I4
    Conserved Domains (2) summary
    COG5109
    Location:60 → 393
    COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam10607
    Location:155 → 299
    CLTH; CTLH/CRA C-terminal to LisH motif domain

  2. XM_038659383.1 → XP_038515311.1  E3 ubiquitin-protein transferase RMND5B isoform X1

    UniProtKB/TrEMBL
    A0A8C0S8N4, A0A8I3N9T8, A0A8I3NCK1, A0A8P0N3I4
    Conserved Domains (2) summary
    COG5109
    Location:60 → 393
    COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam10607
    Location:155 → 299
    CLTH; CTLH/CRA C-terminal to LisH motif domain

  3. XM_038659396.1 → XP_038515324.1  E3 ubiquitin-protein transferase RMND5B isoform X2

    UniProtKB/TrEMBL
    A0A8I3N9T8, A0A8P0N3I4
    Conserved Domains (2) summary
    COG5109
    Location:2 → 333
    COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam10607
    Location:95 → 239
    CLTH; CTLH/CRA C-terminal to LisH motif domain
Nucleotide Protein
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