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LOC4349004 protochlorophyllide reductase B, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4349004, updated on 3-Apr-2024

Summary

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Gene symbol
LOC4349004
Gene description
protochlorophyllide reductase B, chloroplastic-like
Locus tag
OSNPB_100496900
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
PORB
Expression
Broad expression in leaves before flowering (RPKM 221.1), leaves after flowering (RPKM 110.9) and 4 other tissues See more
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Genomic context

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Location:
chromosome: 10
Exon count:
4
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (18900274..18903946)

Chromosome 10 - NC_029265.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107279023 Neighboring gene protein PXR1 Neighboring gene uncharacterized LOC4349005 Neighboring gene 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029265.1 Chromosome 10 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. The rice faded green leaf locus encodes protochlorophyllide oxidoreductase B and is essential for chlorophyll synthesis under high light conditions. Sakuraba Y, et al. Plant J, 2013 Apr. PMID 23289852
  2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. OsPORB plays important roles in maintaining a threshold chlorophyll level throughout leaf development, especially under high light field conditions.
    Title: The rice faded green leaf locus encodes protochlorophyllide oxidoreductase B and is essential for chlorophyll synthesis under high light conditions.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protochlorophyllide reductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protochlorophyllide reductase B, chloroplastic
Names
LOC_Os10g35370
NADPH-protochlorophyllide oxidoreductase B
OSJNBa0017E08.8
PCR B
POR B
XP_015614945.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423073.1 → NP_001410002.1  protochlorophyllide reductase B, chloroplastic

    Status: VALIDATED

    Source sequence(s)
    CB644074, CB659041, CI093541, CI599885
    UniProtKB/Swiss-Prot
    A0A0P0XWE3, Q337H5, Q7XD32, Q8W3D9

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029265.1 Reference IRGSP-1.0 Primary Assembly

    Range
    18900274..18903946
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015759459.1 → XP_015614945.1  protochlorophyllide reductase B, chloroplastic

    UniProtKB/Swiss-Prot
    Q8W3D9
    Conserved Domains (1) summary
    PLN00015
    Location:89 → 396
    PLN00015; protochlorophyllide reductase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8W3D9.1 GenPept UniProtKB/Swiss-Prot:Q8W3D9

Gene LinkOut

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Molecular Biology Databases