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LOC4345947 probable protein phosphatase 2C 66 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345947, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4345947
Gene description
probable protein phosphatase 2C 66
Locus tag
OSNPB_080500300
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsPP2C66; OsJ_026714; OJ1118_A06.15
Expression
Broad expression in leaves after flowering (RPKM 35.5), roots after flowering (RPKM 31.4) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 8
Exon count:
5
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (24700153..24704932, complement)

Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene peroxisome biogenesis protein 5 Neighboring gene pre-mRNA-splicing factor CWC25 homolog Neighboring gene uncharacterized LOC4345949 Neighboring gene pentatricopeptide repeat-containing protein At2g29760, chloroplastic

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable protein phosphatase 2C 66
Names
LOC_Os08g39100
putative protein phosphatase 2C
XP_015650128.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001422615.1 → NP_001409544.1  probable protein phosphatase 2C 66

    Status: VALIDATED

    Source sequence(s)
    AK073076, AP014964
    UniProtKB/Swiss-Prot
    A0A0P0XHL7, Q6ZKL8

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

    Range
    24700153..24704932 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015794642.1 → XP_015650128.1  probable protein phosphatase 2C 66

    UniProtKB/Swiss-Prot
    Q6ZKL8
    Conserved Domains (1) summary
    cd00143
    Location:89 → 401
    PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6ZKL8.1 GenPept UniProtKB/Swiss-Prot:Q6ZKL8

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