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LOC4345787 glutamate decarboxylase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345787, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4345787
Gene description
glutamate decarboxylase 1
Locus tag
OSNPB_080465800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
GAD
Expression
Broad expression in mature seeds (RPKM 133.5), flowers (RPKM 107.7) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 8
Exon count:
7
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (22878705..22882991, complement)

Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9267006 Neighboring gene cytochrome P450 76M5-like Neighboring gene DNA polymerase epsilon subunit B-like Neighboring gene probable potassium transporter 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Rice (Oryza sativa) contains a novel isoform of glutamate decarboxylase that lacks an authentic calmodulin-binding domain at the C-terminus. Akama K, et al. Biochim Biophys Acta, 2001 Dec 30. PMID 11779628
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glutamate decarboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glutamate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glutamate decarboxylase 1; glutamate decarboxylase
Names
Os08g0465800
P0104B02.16-1
putative glutamate decarboxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

    Range
    22878705..22882991 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015794637.2 → XP_015650123.1  glutamate decarboxylase isoform X1

    UniProtKB/TrEMBL
    A2YW09, Q0J553, Q9AQU4
    Conserved Domains (1) summary
    TIGR01788
    Location:22 → 449
    Glu-decarb-GAD; glutamate decarboxylase

  2. XM_015794638.2 → XP_015650124.1  glutamate decarboxylase 1 isoform X2

    UniProtKB/TrEMBL
    A0A0P0XGJ3, B9G1B5, Q6YSB2
    Conserved Domains (1) summary
    TIGR01788
    Location:17 → 445
    Glu-decarb-GAD; glutamate decarboxylase
Nucleotide Protein
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