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LOC4327677 IAA-amino acid hydrolase ILR1-like 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4327677, updated on 3-Apr-2024

Summary

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Gene symbol
LOC4327677
Gene description
IAA-amino acid hydrolase ILR1-like 2
Locus tag
OSNPB_010706900
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
ILL2; P0510F09.6
Expression
Biased expression in flower buds (RPKM 17.8), flowers (RPKM 7.6) and 2 other tissues See more
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Genomic context

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See LOC4327677 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (29327559..29334939, complement)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107279867 Neighboring gene anoctamin-like protein Os01g0706700 Neighboring gene jacalin-related lectin 19 Neighboring gene vesicle transport v-SNARE 13 Neighboring gene protein MAIN-LIKE 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables IAA-Ala conjugate hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in auxin metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
IAA-amino acid hydrolase ILR1-like 2; iAA-amino acid hydrolase ILR1-like 2
Names
LOC_Os01g51060
P0692C11.28
putative auxin conjugate hydrolase (ILL5)
XP_015624333.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001409236.1 → NP_001396165.1  iAA-amino acid hydrolase ILR1-like 2 precursor

    Status: VALIDATED

    Source sequence(s)
    AK105646, AP014957, C98815, C98816, CI595938
    UniProtKB/Swiss-Prot
    A0A0P0V751, Q5N8F2

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    29327559..29334939 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015768847.2 → XP_015624333.1  IAA-amino acid hydrolase ILR1-like 2

    UniProtKB/Swiss-Prot
    Q5N8F2
    Conserved Domains (2) summary
    PLN02693
    Location:48 → 456
    PLN02693; IAA-amino acid hydrolase
    cd08017
    Location:63 → 442
    M20_IAA_Hyd; M20 Peptidase Indole-3-acetic acid amino acid hydrolase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5N8F2.1 GenPept UniProtKB/Swiss-Prot:Q5N8F2

Gene LinkOut

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Molecular Biology Databases