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LOC4327573 uncharacterized LOC4327573 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4327573, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4327573
Gene description
uncharacterized LOC4327573
Locus tag
OSNPB_010823600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Biased expression in roots after flowering (RPKM 6.4), leaves after flowering (RPKM 4.1) and 3 other tissues See more
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Genomic context

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See LOC4327573 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (35175492..35176460)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4327571 Neighboring gene transcription repressor OFP2 Neighboring gene protein GRAVITROPIC IN THE LIGHT 1 Neighboring gene probable E3 ubiquitin-protein ligase ATL44 Neighboring gene U-box domain-containing protein 16

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in chloroplast organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4327573
Names
Os01g0823600
P0031D02.18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    35175492..35176460
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015782454.2 → XP_015637940.1  uncharacterized protein LOC4327573

    UniProtKB/TrEMBL
    A0A0N7KDZ5, A2WWH6, A2ZZ39, Q8LRD0
Nucleotide Protein
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