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LOC4327424 probable metal-nicotianamine transporter YSL18 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4327424, updated on 3-Apr-2024

Summary

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Gene symbol
LOC4327424
Gene description
probable metal-nicotianamine transporter YSL18
Locus tag
OSNPB_010829900
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
YSL18; osysl18
Expression
Biased expression in flowers (RPKM 9.5), flower buds (RPKM 4.2) and 1 other tissue See more
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Genomic context

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Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (35501960..35505369, complement)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4327421 Neighboring gene malate dehydrogenase, chloroplastic Neighboring gene UPF0051 protein slr0074 Neighboring gene internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. OsYSL18 is a rice iron(III)-deoxymugineic acid transporter specifically expressed in reproductive organs and phloem of lamina joints. Aoyama T, et al. Plant Mol Biol, 2009 Aug. PMID 19468840, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oligopeptide transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable metal-nicotianamine transporter YSL18
Names
B1088C09.39
LOC_Os01g61390
P0446G04.12
Protein YELLOW STRIPE LIKE 18
iron(III)-deoxymugineic acid transporter
putative iron transport protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001409095.1 → NP_001396024.1  probable metal-nicotianamine transporter YSL18 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AB190926, CI121248, CI224705, CI593500
    UniProtKB/Swiss-Prot
    A0A0P0VA10, Q6R5L7, Q941V3

  2. NM_001409096.1 → NP_001396025.1  probable metal-nicotianamine transporter YSL18 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AB190926, CI121248, CI224705, CI593500

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    35501960..35505369 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015766092.2 → XP_015621578.1  probable metal-nicotianamine transporter YSL18 isoform X2

    Conserved Domains (1) summary
    pfam03169
    Location:28 → 632
    OPT; OPT oligopeptide transporter protein

  2. XM_015766091.2 → XP_015621577.1  probable metal-nicotianamine transporter YSL18 isoform X1

    UniProtKB/Swiss-Prot
    Q941V3
    Conserved Domains (1) summary
    pfam03169
    Location:28 → 647
    OPT; OPT oligopeptide transporter protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q941V3.1 GenPept UniProtKB/Swiss-Prot:Q941V3

Gene LinkOut

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Molecular Biology Databases