HACD2 3-hydroxyacyl-CoA dehydratase 2 [Gallus gallus (chicken)] - Gene

Summary

Symbol: HACD2provided by CGNC
Full Name: 3-hydroxyacyl-CoA dehydratase 2provided by CGNC
Primary source: CGNC:8894
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as: PTPLB
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 7

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	7	NC_052538.1 (26768587..26788282, complement)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	7	NC_052579.1 (26683558..26703243, complement)

Chromosome 7 - NC_052538.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables 3-hydroxyacyl-CoA dehydratase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in fatty acid elongation	IEA Inferred from Electronic Annotation more info	PubMed
involved_in sphingolipid biosynthetic process	IEA Inferred from Electronic Annotation more info	PubMed
involved_in very long-chain fatty acid biosynthetic process	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in endoplasmic reticulum membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2

Names: protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b; protein tyrosine phosphatase-like protein PTPLB; protein-tyrosine phosphatase-like member B

NP_001012938.2

EC 4.2.1.134

XP_046777447.1

EC 4.2.1.134

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001012920.5 → NP_001012938.2 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2

Status: VALIDATED

Source sequence(s)

JAENSK010000236

UniProtKB/TrEMBL

F6U467, Q5ZII7

Conserved Domains (1) summary

pfam04387
Location:77 → 236

PTPLA; Protein tyrosine phosphatase-like protein, PTPLA

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

NC_052538.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Range

26768587..26788282 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

NC_052579.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Range

26683558..26703243 complement

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GenBank, FASTA, Sequence Viewer (Graphics)