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JMJD4 jumonji domain containing 4 [ Gallus gallus (chicken) ]

Gene ID: 420400, updated on 3-Apr-2024

Summary

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Symbol
JMJD4provided by CGNC
Full Name
jumonji domain containing 4provided by CGNC
Primary source
CGNC:4036
See related
Ensembl:ENSGALG00010024874
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (3240992..3250025)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (3244827..3253879)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124417716 Neighboring gene synaptosomal associated protein 47 Neighboring gene ALS2 C-terminal like Neighboring gene microRNA 1639 Neighboring gene transmembrane inner ear

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H4R3 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of translational termination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
2-oxoglutarate and iron-dependent oxygenase JMJD4
Names
jmjC domain-containing protein 4
jumonji domain-containing protein 4
lysyl-hydroxylase JMJD4
NP_001026130.2
XP_015136573.1
XP_046766813.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030959.2 → NP_001026130.2  2-oxoglutarate and iron-dependent oxygenase JMJD4

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000035
    UniProtKB/Swiss-Prot
    Q5ZHV5
    UniProtKB/TrEMBL
    F1NX61
    Conserved Domains (1) summary
    cl40423
    Location:41 → 283
    cupin_RmlC-like; RmlC-like cupin superfamily

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    3240992..3250025
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015281087.4 → XP_015136573.1  2-oxoglutarate and iron-dependent oxygenase JMJD4 isoform X1

    UniProtKB/Swiss-Prot
    Q5ZHV5
    UniProtKB/TrEMBL
    F1NX61
    Related
    ENSGALP00010037487.1, ENSGALT00010060728.1
    Conserved Domains (1) summary
    cl40423
    Location:41 → 283
    cupin_RmlC-like; RmlC-like cupin superfamily

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    3244827..3253879
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046910857.1 → XP_046766813.1  2-oxoglutarate and iron-dependent oxygenase JMJD4 isoform X1

    UniProtKB/TrEMBL
    F1NX61
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5ZHV5.1 GenPept UniProtKB/Swiss-Prot:Q5ZHV5

Gene LinkOut

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