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AFF3 AF4/FMR2 family member 3 [ Gallus gallus (chicken) ]

Gene ID: 418705, updated on 5-Mar-2024

Summary

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Symbol
AFF3provided by CGNC
Full Name
AF4/FMR2 family member 3provided by CGNC
Primary source
CGNC:15708
See related
Ensembl:ENSGALG00010015886
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
21
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (132767584..133098797, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (132725741..133057471, complement)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 5B Neighboring gene uncharacterized LOC107051965 Neighboring gene REV1, DNA directed polymerase Neighboring gene U6atac minor spliceosomal RNA Neighboring gene uncharacterized LOC112531513 Neighboring gene LON peptidase N-terminal domain and ring finger 2 Neighboring gene microRNA 6559

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of super elongation complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AF4/FMR2 family member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    132767584..133098797 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015277796.4 → XP_015133282.1  AF4/FMR2 family member 3 isoform X5

    Conserved Domains (3) summary
    PHA03307
    Location:524 → 664
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam05110
    Location:20 → 486
    AF-4; AF-4 proto-oncoprotein
    pfam18876
    Location:965 → 1223
    AF-4_C; AF-4 proto-oncoprotein C-terminal region

  2. XM_015277795.4 → XP_015133281.1  AF4/FMR2 family member 3 isoform X4

    Conserved Domains (3) summary
    PHA03307
    Location:537 → 677
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam05110
    Location:20 → 499
    AF-4; AF-4 proto-oncoprotein
    pfam18876
    Location:978 → 1236
    AF-4_C; AF-4 proto-oncoprotein C-terminal region

  3. XM_015277794.4 → XP_015133280.1  AF4/FMR2 family member 3 isoform X2

    Conserved Domains (3) summary
    PHA03307
    Location:538 → 678
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam05110
    Location:20 → 500
    AF-4; AF-4 proto-oncoprotein
    pfam18876
    Location:979 → 1237
    AF-4_C; AF-4 proto-oncoprotein C-terminal region

  4. XM_015277792.4 → XP_015133278.1  AF4/FMR2 family member 3 isoform X3

    Conserved Domains (3) summary
    PHA03307
    Location:538 → 678
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam05110
    Location:20 → 500
    AF-4; AF-4 proto-oncoprotein
    pfam18876
    Location:979 → 1237
    AF-4_C; AF-4 proto-oncoprotein C-terminal region

  5. XM_040657350.2 → XP_040513284.1  AF4/FMR2 family member 3 isoform X6

    Conserved Domains (1) summary
    PHA03307
    Location:539 → 679
    PHA03307; transcriptional regulator ICP4; Provisional

  6. XM_015277791.4 → XP_015133277.1  AF4/FMR2 family member 3 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YTP1
    Related
    ENSGALP00010022105.1, ENSGALT00010038288.1
    Conserved Domains (3) summary
    PHA03307
    Location:539 → 679
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam05110
    Location:20 → 501
    AF-4; AF-4 proto-oncoprotein
    pfam18876
    Location:980 → 1238
    AF-4_C; AF-4 proto-oncoprotein C-terminal region

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    132725741..133057471 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040661314.2 → XP_040517248.1  AF4/FMR2 family member 3 isoform X5

    Conserved Domains (3) summary
    PHA03307
    Location:524 → 664
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam05110
    Location:20 → 486
    AF-4; AF-4 proto-oncoprotein
    pfam18876
    Location:965 → 1223
    AF-4_C; AF-4 proto-oncoprotein C-terminal region

  2. XM_040661313.2 → XP_040517247.1  AF4/FMR2 family member 3 isoform X4

    Conserved Domains (3) summary
    PHA03307
    Location:537 → 677
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam05110
    Location:20 → 499
    AF-4; AF-4 proto-oncoprotein
    pfam18876
    Location:978 → 1236
    AF-4_C; AF-4 proto-oncoprotein C-terminal region

  3. XM_040661311.2 → XP_040517245.1  AF4/FMR2 family member 3 isoform X2

    Conserved Domains (3) summary
    PHA03307
    Location:538 → 678
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam05110
    Location:20 → 500
    AF-4; AF-4 proto-oncoprotein
    pfam18876
    Location:979 → 1237
    AF-4_C; AF-4 proto-oncoprotein C-terminal region

  4. XM_040661312.2 → XP_040517246.1  AF4/FMR2 family member 3 isoform X3

    Conserved Domains (3) summary
    PHA03307
    Location:538 → 678
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam05110
    Location:20 → 500
    AF-4; AF-4 proto-oncoprotein
    pfam18876
    Location:979 → 1237
    AF-4_C; AF-4 proto-oncoprotein C-terminal region

  5. XM_040661316.2 → XP_040517250.1  AF4/FMR2 family member 3 isoform X6

    Conserved Domains (1) summary
    PHA03307
    Location:539 → 679
    PHA03307; transcriptional regulator ICP4; Provisional

  6. XM_040661310.2 → XP_040517244.1  AF4/FMR2 family member 3 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YTP1
    Conserved Domains (3) summary
    PHA03307
    Location:539 → 679
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam05110
    Location:20 → 501
    AF-4; AF-4 proto-oncoprotein
    pfam18876
    Location:980 → 1238
    AF-4_C; AF-4 proto-oncoprotein C-terminal region
Nucleotide Protein Strain
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