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RAP1B RAP1B, member of RAS oncogene family [ Gallus gallus (chicken) ]

Gene ID: 417840, updated on 4-Apr-2024

Summary

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Symbol
RAP1Bprovided by CGNC
Full Name
RAP1B, member of RAS oncogene familyprovided by CGNC
Primary source
CGNC:50604
See related
Ensembl:ENSGALG00010012538
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See RAP1B in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (35339372..35373267)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (35687035..35720712)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene Mdm1 nuclear protein Neighboring gene uncharacterized LOC107052749 Neighboring gene nucleoporin 107 Neighboring gene solute carrier family 35 member E3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Avian Hepatitis E Virus ORF2 Protein Interacts with Rap1b to Induce Cytoskeleton Rearrangement That Facilitates Virus Internalization. Zhang B, et al. Microbiol Spectr, 2022 Feb 23. PMID 35138149, Free PMC Article
  2. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Avian Hepatitis E Virus ORF2 Protein Interacts with Rap1b to Induce Cytoskeleton Rearrangement That Facilitates Virus Internalization.
    Title: Avian Hepatitis E Virus ORF2 Protein Interacts with Rap1b to Induce Cytoskeleton Rearrangement That Facilitates Virus Internalization.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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Homology

Clone Names

  • AC113404.1

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GDP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Rap protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to cAMP IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of synaptic vesicle exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras-related protein Rap-1b
Names
RCJMB04_4h13
Ras-related protein Rap-1b-like protein
NP_001007853.1
XP_015137180.1
XP_046763244.1
XP_046763245.1
XP_046763246.1
XP_046794161.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007852.1 → NP_001007853.1  ras-related protein Rap-1b

    See identical proteins and their annotated locations for NP_001007853.1

    Status: PROVISIONAL

    Source sequence(s)
    AJ719603
    UniProtKB/Swiss-Prot
    Q5ZHX1
    UniProtKB/TrEMBL
    A0A8V0Y9S1
    Related
    ENSGALP00010017472.1, ENSGALT00010030074.1
    Conserved Domains (1) summary
    cd04175
    Location:3 → 167
    Rap1; Rap1 family GTPase consists of Rap1a and Rap1b isoforms

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    35339372..35373267
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015281694.4 → XP_015137180.1  ras-related protein Rap-1b isoform X1

    UniProtKB/Swiss-Prot
    Q5ZHX1
    UniProtKB/TrEMBL
    A0A8V0Y9S1
    Related
    ENSGALP00010017467.1, ENSGALT00010030064.1
    Conserved Domains (1) summary
    cd04175
    Location:3 → 167
    Rap1; Rap1 family GTPase consists of Rap1a and Rap1b isoforms

  2. XM_046938205.1 → XP_046794161.1  ras-related protein Rap-1b isoform X1

    UniProtKB/Swiss-Prot
    Q5ZHX1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    35687035..35720712
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046907288.1 → XP_046763244.1  ras-related protein Rap-1b isoform X1

    UniProtKB/Swiss-Prot
    Q5ZHX1

  2. XM_046907289.1 → XP_046763245.1  ras-related protein Rap-1b isoform X1

    UniProtKB/Swiss-Prot
    Q5ZHX1

  3. XM_046907290.1 → XP_046763246.1  ras-related protein Rap-1b isoform X1

    UniProtKB/Swiss-Prot
    Q5ZHX1
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5ZHX1.1 GenPept UniProtKB/Swiss-Prot:Q5ZHX1

Gene LinkOut

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