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CTDSPL CTD small phosphatase like [ Gallus gallus (chicken) ]

Gene ID: 408252, updated on 3-Apr-2024

Summary

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Symbol
CTDSPLprovided by CGNC
Full Name
CTD small phosphatase likeprovided by CGNC
Primary source
CGNC:49906
See related
Ensembl:ENSGALG00010026360
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
NIF; NFI1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (4504837..4575936)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (4506500..4577993)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121109646 Neighboring gene uncharacterized LOC112531926 Neighboring gene microRNA 26a-1 Neighboring gene villin like Neighboring gene phospholipase C delta 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II CTD heptapeptide repeat phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CTD small phosphatase-like protein
Names
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like
CTDSP-like
NLI-interacting factor 1
NLI/Ldb1/CLIM interacting factor
nuclear LIM interactor-interacting factor 1
small C-terminal domain phosphatase 3
NP_001001316.1
XP_015136538.1
XP_025002847.1
XP_040533112.1
XP_040533113.1
XP_040533114.1
XP_046766521.1
XP_046766522.1
XP_046766523.1
XP_046766524.1
XP_046766525.1
XP_046766526.1
XP_046766527.1
XP_046766528.1
XP_046766529.1
XP_046775507.1
XP_046775515.1
XP_046775518.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001001316.2 → NP_001001316.1  CTD small phosphatase-like protein

    See identical proteins and their annotated locations for NP_001001316.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000035
    UniProtKB/Swiss-Prot
    Q9PTJ6, Q9PTJ7, Q9PTJ8, Q9PTJ9
    UniProtKB/TrEMBL
    A0A8V1AD90
    Related
    ENSGALP00010039467.1, ENSGALT00010064204.1
    Conserved Domains (1) summary
    TIGR02251
    Location:105 → 263
    HIF-SF_euk; Dullard-like phosphatase domain

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    4504837..4575936
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040677180.2 → XP_040533114.1  CTD small phosphatase-like protein isoform X2

    UniProtKB/TrEMBL
    A0A8V1AD90
    Conserved Domains (1) summary
    TIGR02251
    Location:105 → 263
    HIF-SF_euk; Dullard-like phosphatase domain

  2. XM_015281052.4 → XP_015136538.1  CTD small phosphatase-like protein isoform X4

    UniProtKB/TrEMBL
    A0A8V1AD90
    Related
    ENSGALP00010039471.1, ENSGALT00010064216.1
    Conserved Domains (1) summary
    TIGR02251
    Location:94 → 252
    HIF-SF_euk; Dullard-like phosphatase domain

  3. XM_025147079.3 → XP_025002847.1  CTD small phosphatase-like protein isoform X3

    UniProtKB/TrEMBL
    A0A8V1AD90
    Conserved Domains (1) summary
    TIGR02251
    Location:94 → 252
    HIF-SF_euk; Dullard-like phosphatase domain

  4. XM_040677178.2 → XP_040533112.1  CTD small phosphatase-like protein isoform X7

    UniProtKB/TrEMBL
    A0A8V1A5W1
    Related
    ENSGALP00010039463.1, ENSGALT00010064192.1
    Conserved Domains (1) summary
    TIGR02251
    Location:163 → 321
    HIF-SF_euk; Dullard-like phosphatase domain

  5. XM_040677179.2 → XP_040533113.1  CTD small phosphatase-like protein isoform X8

    Conserved Domains (1) summary
    TIGR02251
    Location:152 → 310
    HIF-SF_euk; Dullard-like phosphatase domain

  6. XM_046919551.1 → XP_046775507.1  CTD small phosphatase-like protein isoform X1

    Related
    ENSGALP00010039459.1, ENSGALT00010064183.1

  7. XM_046919559.1 → XP_046775515.1  CTD small phosphatase-like protein isoform X5

    Related
    ENSGALP00010039447.1, ENSGALT00010064160.1

  8. XM_046919562.1 → XP_046775518.1  CTD small phosphatase-like protein isoform X6

    Related
    ENSGALP00010039442.1, ENSGALT00010064148.1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    4506500..4577993
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046910569.1 → XP_046766525.1  CTD small phosphatase-like protein isoform X9

    UniProtKB/Swiss-Prot
    Q9PTJ6, Q9PTJ7, Q9PTJ8, Q9PTJ9

  2. XM_046910567.1 → XP_046766523.1  CTD small phosphatase-like protein isoform X2

  3. XM_046910571.1 → XP_046766527.1  CTD small phosphatase-like protein isoform X4

  4. XM_046910566.1 → XP_046766522.1  CTD small phosphatase-like protein isoform X2

  5. XM_046910570.1 → XP_046766526.1  CTD small phosphatase-like protein isoform X4

  6. XM_046910568.1 → XP_046766524.1  CTD small phosphatase-like protein isoform X3

  7. XM_046910565.1 → XP_046766521.1  CTD small phosphatase-like protein isoform X1

  8. XM_046910572.1 → XP_046766528.1  CTD small phosphatase-like protein isoform X5

  9. XM_046910573.1 → XP_046766529.1  CTD small phosphatase-like protein isoform X6

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9PTJ6.2 GenPept UniProtKB/Swiss-Prot:Q9PTJ6

Gene LinkOut

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