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NOCT nocturnin [ Gallus gallus (chicken) ]

Gene ID: 404779, updated on 3-Apr-2024

Summary

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Symbol
NOCTprovided by CGNC
Full Name
nocturninprovided by CGNC
Primary source
CGNC:7422
See related
Ensembl:ENSGALG00010008469
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
NOC; MNOC; CCRN4L
Orthologs
human mouse all
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Genomic context

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See NOCT in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (28780065..28785992)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (28732331..28737862)

Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 7 member 11 Neighboring gene uncharacterized LOC101751121 Neighboring gene E74 like ETS transcription factor 2 Neighboring gene mitochondria localized glutamic acid rich protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Rhythmic expression of Nocturnin mRNA in multiple tissues of the mouse. Wang Y, et al. BMC Dev Biol, 2001. PMID 11394964, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables poly(A)-specific ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in circadian rhythm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nocturnin
Names
CCR4 carbon catabolite repression 4-like
NP_001009928.2
XP_015131648.2
XP_025005306.2
XP_046771577.1
XP_046771578.1
XP_046771579.1
XP_046795902.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001009928.2 → NP_001009928.2  nocturnin

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000073
    UniProtKB/TrEMBL
    A0A8V0XU55, Q71H64
    Related
    ENSGALP00010011773.1, ENSGALT00010020244.1
    Conserved Domains (1) summary
    cd09096
    Location:132 → 411
    Deadenylase_nocturnin; C-terminal deadenylase domain of nocturnin and related domains

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    28780065..28785992
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025149538.3 → XP_025005306.2  nocturnin isoform X1

    UniProtKB/TrEMBL
    Q71H64
    Conserved Domains (1) summary
    cd09096
    Location:203 → 482
    Deadenylase_nocturnin; C-terminal deadenylase domain of nocturnin and related domains

  2. XM_015276162.4 → XP_015131648.2  nocturnin isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y0E5
    Conserved Domains (1) summary
    cd09096
    Location:78 → 357
    Deadenylase_nocturnin; C-terminal deadenylase domain of nocturnin and related domains

  3. XM_046939946.1 → XP_046795902.1  nocturnin isoform X2

    Related
    ENSGALP00010011764.1, ENSGALT00010020228.1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    28732331..28737862
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046915621.1 → XP_046771577.1  nocturnin isoform X2

  2. XM_046915623.1 → XP_046771579.1  nocturnin isoform X2

  3. XM_046915622.1 → XP_046771578.1  nocturnin isoform X2

Nucleotide Protein
Heading Accession and Version

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