U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

NTM neurotrimin [ Gallus gallus (chicken) ]

Gene ID: 395450, updated on 3-Apr-2024

Summary

Go to the top of the page Help
Official Symbol
NTMprovided by CGNC
Official Full Name
neurotriminprovided by CGNC
Primary source
CGNC:49326
See related
Ensembl:ENSGALG00010022891
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
HNT; CEPU; CEPU-SE
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See NTM in Genome Data Viewer
Location:
chromosome: 24
Exon count:
17
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 24 NC_052555.1 (1851059..2164102)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 24 NC_052596.1 (1810868..2123787)

Chromosome 24 - NC_052555.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121107518 Neighboring gene uncharacterized LOC107055048 Neighboring gene sorting nexin 19 Neighboring gene microRNA 1601 Neighboring gene opioid binding protein/cell adhesion molecule like Neighboring gene uncharacterized LOC121107519 Neighboring gene immunoglobulin superfamily member 9B

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. cDNA cloning of the CEPUS, a secreted type of neural glycoprotein belonging to the immunoglobulin-like opioid binding cell adhesion molecule (OBCAM) subfamily. Kim DS, et al. Mol Cells, 1999 Jun 30. PMID 10420985
  2. CEPU-1, a novel immunoglobulin superfamily molecule, is expressed by developing cerebellar Purkinje cells. Spaltmann F, et al. J Neurosci, 1996 Mar 1. PMID 8774445, Free PMC Article
  3. Neurotractin, a novel neurite outgrowth-promoting Ig-like protein that interacts with CEPU-1 and LAMP. Marg A, et al. J Cell Biol, 1999 May 17. PMID 10330412, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
protein CEPU-1
Names
IgLON family protein
neural secreted glycoprotein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_204711.2 → NP_990042.2  protein CEPU-1 precursor

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000341
    UniProtKB/Swiss-Prot
    Q90773
    UniProtKB/TrEMBL
    A0A8V0ZK70
    Related
    ENSGALP00010033760.1, ENSGALT00010055756.1
    Conserved Domains (3) summary
    pfam13927
    Location:134 → 203
    Ig_3; Immunoglobulin domain
    cd00096
    Location:221 → 227
    Ig; putative Ig strand A [structural motif]
    cl11960
    Location:221 → 309
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052555.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    1851059..2164102
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015297955.4 → XP_015153441.1  protein CEPU-1 isoform X8

    UniProtKB/TrEMBL
    A0A8V0ZSE9, F1NIV5
    Related
    ENSGALP00010033763.1, ENSGALT00010055762.1
    Conserved Domains (4) summary
    smart00408
    Location:140 → 196
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:224 → 302
    IG_like; Immunoglobulin like
    pfam00047
    Location:217 → 301
    ig; Immunoglobulin domain
    cl11960
    Location:35 → 123
    Ig; Immunoglobulin domain

  2. XM_040652025.2 → XP_040507959.1  protein CEPU-1 isoform X11

    UniProtKB/TrEMBL
    A0A8V0ZSE9, A0A8V0ZXZ2
    Related
    ENSGALP00010033761.1, ENSGALT00010055759.1
    Conserved Domains (3) summary
    smart00408
    Location:140 → 196
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:224 → 302
    IG; Immunoglobulin
    cd00096
    Location:142 → 151
    Ig; Ig strand B [structural motif]

  3. XM_025143173.3 → XP_024998941.1  protein CEPU-1 isoform X9

    UniProtKB/Swiss-Prot
    Q90773
    Conserved Domains (3) summary
    pfam00047
    Location:224 → 308
    ig; Immunoglobulin domain
    pfam13927
    Location:134 → 203
    Ig_3; Immunoglobulin domain
    cl11960
    Location:42 → 130
    Ig; Immunoglobulin domain

  4. XM_046903731.1 → XP_046759687.1  protein CEPU-1 isoform X6

    Related
    ENSGALP00010033750.1, ENSGALT00010055737.1

  5. XM_046903730.1 → XP_046759686.1  protein CEPU-1 isoform X4

    UniProtKB/TrEMBL
    A0A8V0ZK67
    Related
    ENSGALP00010033755.1, ENSGALT00010055746.1

  6. XM_040652026.2 → XP_040507960.1  protein CEPU-1 isoform X14

    UniProtKB/TrEMBL
    A0A8V0ZSE9
    Conserved Domains (3) summary
    smart00408
    Location:108 → 164
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:192 → 270
    IG; Immunoglobulin
    cd00096
    Location:110 → 119
    Ig; Ig strand B [structural motif]

  7. XM_046903733.1 → XP_046759689.1  protein CEPU-1 isoform X14

  8. XM_046903729.1 → XP_046759685.1  protein CEPU-1 isoform X2

  9. XM_040652024.2 → XP_040507958.1  protein CEPU-1 isoform X1

    Conserved Domains (4) summary
    smart00408
    Location:231 → 287
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:126 → 214
    IG; Immunoglobulin
    smart00410
    Location:315 → 393
    IG_like; Immunoglobulin like
    cd00096
    Location:319 → 329
    Ig; Ig strand B [structural motif]

  10. XM_025143177.3 → XP_024998945.2  protein CEPU-1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZXX7
    Related
    ENSGALP00010033746.1, ENSGALT00010055731.1
    Conserved Domains (4) summary
    smart00408
    Location:231 → 287
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:126 → 214
    IG; Immunoglobulin
    smart00410
    Location:315 → 393
    IG_like; Immunoglobulin like
    cd00096
    Location:319 → 329
    Ig; Ig strand B [structural motif]

  11. XM_015297952.4 → XP_015153438.1  protein CEPU-1 isoform X5

    UniProtKB/TrEMBL
    A0A8V0ZSE9
    Conserved Domains (4) summary
    smart00408
    Location:153 → 209
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:237 → 315
    IG_like; Immunoglobulin like
    pfam00047
    Location:230 → 314
    ig; Immunoglobulin domain
    cl11960
    Location:48 → 136
    Ig; Immunoglobulin domain

  12. XM_015297954.4 → XP_015153440.1  protein CEPU-1 isoform X7

    UniProtKB/TrEMBL
    A0A8V0ZSE9
    Conserved Domains (4) summary
    smart00408
    Location:153 → 209
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:237 → 315
    IG_like; Immunoglobulin like
    pfam00047
    Location:230 → 314
    ig; Immunoglobulin domain
    cl11960
    Location:48 → 136
    Ig; Immunoglobulin domain

  13. XM_046903734.1 → XP_046759690.1  protein CEPU-1 isoform X14

    Related
    ENSGALP00010033754.1, ENSGALT00010055744.1

  14. XM_046903732.1 → XP_046759688.1  protein CEPU-1 isoform X13

  15. XM_025143175.3 → XP_024998943.1  protein CEPU-1 isoform X12

    UniProtKB/TrEMBL
    A0A8V0ZSE9
    Conserved Domains (3) summary
    pfam00047
    Location:202 → 286
    ig; Immunoglobulin domain
    pfam13927
    Location:112 → 181
    Ig_3; Immunoglobulin domain
    cl11960
    Location:20 → 108
    Ig; Immunoglobulin domain

  16. XM_015297956.4 → XP_015153442.1  protein CEPU-1 isoform X10

    UniProtKB/TrEMBL
    A0A8V0ZSE9
    Conserved Domains (4) summary
    smart00408
    Location:125 → 181
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:209 → 287
    IG_like; Immunoglobulin like
    pfam00047
    Location:202 → 286
    ig; Immunoglobulin domain
    cl11960
    Location:20 → 108
    Ig; Immunoglobulin domain

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052596.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    1810868..2123787
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046932278.1 → XP_046788234.1  protein CEPU-1 isoform X8

    UniProtKB/TrEMBL
    F1NIV5

  2. XM_046932282.1 → XP_046788238.1  protein CEPU-1 isoform X11

    UniProtKB/TrEMBL
    A0A8V0ZXZ2

  3. XM_046932283.1 → XP_046788239.1  protein CEPU-1 isoform X11

    UniProtKB/TrEMBL
    A0A8V0ZXZ2

  4. XM_046932279.1 → XP_046788235.1  protein CEPU-1 isoform X8

    UniProtKB/TrEMBL
    F1NIV5

  5. XM_046932280.1 → XP_046788236.1  protein CEPU-1 isoform X9

  6. XM_046932276.1 → XP_046788232.1  protein CEPU-1 isoform X6

  7. XM_046932274.1 → XP_046788230.1  protein CEPU-1 isoform X4

    UniProtKB/TrEMBL
    A0A8V0ZK67

  8. XM_046932287.1 → XP_046788243.1  protein CEPU-1 isoform X14

  9. XM_046932286.1 → XP_046788242.1  protein CEPU-1 isoform X14

  10. XM_046932272.1 → XP_046788228.1  protein CEPU-1 isoform X2

  11. XM_046932271.1 → XP_046788227.1  protein CEPU-1 isoform X1

  12. XM_046932273.1 → XP_046788229.1  protein CEPU-1 isoform X3

  13. XM_046932275.1 → XP_046788231.1  protein CEPU-1 isoform X5

  14. XM_046932277.1 → XP_046788233.1  protein CEPU-1 isoform X7

  15. XM_046932288.1 → XP_046788244.1  protein CEPU-1 isoform X14

  16. XM_046932285.1 → XP_046788241.1  protein CEPU-1 isoform X13

  17. XM_046932284.1 → XP_046788240.1  protein CEPU-1 isoform X12

  18. XM_046932281.1 → XP_046788237.1  protein CEPU-1 isoform X10

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q90773.1 GenPept UniProtKB/Swiss-Prot:Q90773

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Miscellaneous