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pou3f1.S POU class 3 homeobox 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 394338, updated on 18-Aug-2023

Summary

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Official Symbol
pou3f1.S
Official Full Name
POU class 3 homeobox 1 S homeolog
Primary source
Xenbase:XB-GENE-6254450
Locus tag
XELAEV_18003202mg
See related
EnsemblRapid:ENSXLAG00005008194
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
oct6; scip; oct-6; pou50; nrl-22; pou1-A; pou3f1-a; pou3f1-b; pou3f1.L
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Genomic context

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Location:
chromosome: 2S
Exon count:
1
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (70316690..70318020, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694834.1 (97604..98934, complement)

Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene CUB domain-containing protein 1-like Neighboring gene U2 spliceosomal RNA Neighboring gene Ras related GTP binding C S homeolog Neighboring gene MYC binding protein S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. XLPOU 1 and XLPOU 2, two novel POU domain genes expressed in the dorsoanterior region of Xenopus embryos. Agarwal VR, et al. Dev Biol, 1991 Oct. PMID 1717323
  2. Cloning and sequencing of POU-boxes expressed in Xenopus laevis neurula embryos. Baltzinger M, et al. Nucleic Acids Res, 1990 Oct 25. PMID 2235499, Free PMC Article
  3. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
POU domain, class 3, transcription factor 1-A
Names
POU 1 transcription factor
POU class 3 homeobox 1 L homeolog
XLPOU 1
homeotic protein NRL-22
transcription factor POU1
xlPOU1
xlnrl-22

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164582.2 → NP_001158054.1  POU domain, class 3, transcription factor 1-A

    See identical proteins and their annotated locations for NP_001158054.1

    Status: PROVISIONAL

    Source sequence(s)
    X59056
    UniProtKB/Swiss-Prot
    P20915, P31363, Q7ZYC6
    Related
    ENSXLAP00005023538.1, ENSXLAT00005024243.1
    Conserved Domains (2) summary
    smart00352
    Location:175 → 249
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:270 → 323
    Homeobox; Homeobox domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    70316690..70318020 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases