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Nxpe3 neurexophilin and PC-esterase domain family, member 3 [ Mus musculus (house mouse) ]

Gene ID: 385658, updated on 5-Mar-2024

Summary

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Official Symbol
Nxpe3provided by MGI
Official Full Name
neurexophilin and PC-esterase domain family, member 3provided by MGI
Primary source
MGI:MGI:2686598
See related
Ensembl:ENSMUSG00000075033 AllianceGenome:MGI:2686598
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm611; Fam55c; Gm1752
Summary
Orthologous to human NXPE3 (neurexophilin and PC-esterase domain family member 3). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in testis adult (RPKM 3.3), genital fat pad adult (RPKM 2.8) and 24 other tissues See more
Orthologs
human all
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Genomic context

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See Nxpe3 in Genome Data Viewer
Location:
16 C1.1; 16 33.65 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (55660316..55717467, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (55839953..55897104, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_41041 Neighboring gene predicted gene, 26369 Neighboring gene STARR-positive B cell enhancer mm9_chr16:55820985-55821286 Neighboring gene STARR-positive B cell enhancer mm9_chr16:55822089-55822389 Neighboring gene nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta Neighboring gene STARR-positive B cell enhancer ABC_E7463 Neighboring gene STARR-positive B cell enhancer ABC_E10911 Neighboring gene STARR-positive B cell enhancer ABC_E1926 Neighboring gene adaptor-related protein complex 3, sigma 1 subunit pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E7464 Neighboring gene conserved helix-loop-helix ubiquitous kinase pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E7465 Neighboring gene centrosomal protein 97 Neighboring gene ribosomal protein L11 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC15606

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
NXPE family member 3
Names
family with sequence similarity 55, member C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001134457.1 → NP_001127929.1  NXPE family member 3

    See identical proteins and their annotated locations for NP_001127929.1

    Status: VALIDATED

    Source sequence(s)
    AC165151, AEKQ02019924
    Consensus CDS
    CCDS49870.1
    UniProtKB/TrEMBL
    B9EKK6
    Related
    ENSMUSP00000097296.4, ENSMUST00000099705.5
    Conserved Domains (1) summary
    pfam06312
    Location:75 → 284
    Neurexophilin

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    55660316..55717467 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030249167.1 → XP_030105027.1  NXPE family member 3 isoform X2

    UniProtKB/TrEMBL
    B9EKK6
    Conserved Domains (1) summary
    pfam06312
    Location:75 → 284
    Neurexophilin

  2. XM_011245943.3 → XP_011244245.1  NXPE family member 3 isoform X1

    See identical proteins and their annotated locations for XP_011244245.1

    Conserved Domains (1) summary
    pfam06312
    Location:75 → 275
    Neurexophilin

  3. XM_006522325.4 → XP_006522388.1  NXPE family member 3 isoform X2

    See identical proteins and their annotated locations for XP_006522388.1

    UniProtKB/TrEMBL
    B9EKK6
    Conserved Domains (1) summary
    pfam06312
    Location:75 → 284
    Neurexophilin

  4. XM_011245941.3 → XP_011244243.1  NXPE family member 3 isoform X1

    See identical proteins and their annotated locations for XP_011244243.1

    Conserved Domains (1) summary
    pfam06312
    Location:75 → 275
    Neurexophilin

  5. XM_011245944.3 → XP_011244246.1  NXPE family member 3 isoform X1

    See identical proteins and their annotated locations for XP_011244246.1

    Conserved Domains (1) summary
    pfam06312
    Location:75 → 275
    Neurexophilin

  6. XM_011245942.2 → XP_011244244.1  NXPE family member 3 isoform X1

    See identical proteins and their annotated locations for XP_011244244.1

    Conserved Domains (1) summary
    pfam06312
    Location:75 → 275
    Neurexophilin
Nucleotide Protein Strain
Heading Accession and Version

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