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Tspan31 tetraspanin 31 [ Rattus norvegicus (Norway rat) ]

Gene ID: 362890, updated on 3-Apr-2024

Summary

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Official Symbol
Tspan31provided by RGD
Official Full Name
tetraspanin 31provided by RGD
Primary source
RGD:1309876
See related
Ensembl:ENSRNOG00000025592 AllianceGenome:RGD:1309876
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Sas
Summary
Predicted to be integral component of plasma membrane. Orthologous to human TSPAN31 (tetraspanin 31). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Liver (RPKM 695.3), Adrenal (RPKM 307.2) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
7q22
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (64774881..64783534, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (62889552..62892428, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (70352679..70355555, complement)

Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450, family 27, subfamily b, polypeptide 1 Neighboring gene membrane associated ring-CH-type finger 9 Neighboring gene cyclin-dependent kinase 4 Neighboring gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 Neighboring gene OS9, endoplasmic reticulum lectin Neighboring gene uncharacterized LOC134479707

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC105551

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
tetraspanin-31
Names
sarcoma amplified sequence
sarcoma-amplified sequence homolog
tspan-31

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001008378.1 → NP_001008379.1  tetraspanin-31

    See identical proteins and their annotated locations for NP_001008379.1

    Status: PROVISIONAL

    Source sequence(s)
    BC086452
    UniProtKB/Swiss-Prot
    Q5U1V9
    UniProtKB/TrEMBL
    A6HQS1
    Conserved Domains (1) summary
    pfam00335
    Location:8 → 199
    Tetraspannin; Tetraspanin family

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086025.1 Reference GRCr8

    Range
    64774881..64783534 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063263799.1 → XP_063119869.1  tetraspanin-31 isoform X1

    UniProtKB/Swiss-Prot
    Q5U1V9
    UniProtKB/TrEMBL
    A6HQS1

  2. XM_063263798.1 → XP_063119868.1  tetraspanin-31 isoform X1

    UniProtKB/Swiss-Prot
    Q5U1V9
    UniProtKB/TrEMBL
    A6HQS1

  3. XM_017594923.3 → XP_017450412.1  tetraspanin-31 isoform X2

    UniProtKB/TrEMBL
    A0A8L2ULA8
    Related
    ENSRNOP00000036976.4
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5U1V9.1 GenPept UniProtKB/Swiss-Prot:Q5U1V9

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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