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rpl7 ribosomal protein L7 [ Danio rerio (zebrafish) ]

Gene ID: 336710, updated on 7-Apr-2024

Summary

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Official Symbol
rpl7provided by ZNC
Official Full Name
ribosomal protein L7provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-8654
See related
Ensembl:ENSDARG00000007320 AllianceGenome:ZFIN:ZDB-GENE-030131-8654
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
bb02h10; mg:bb02h10; wu:fa93c11
Summary
Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within regulation of cell cycle. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human RPL7 (ribosomal protein L7). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (30177476..30182333, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (30193943..30198800, complement)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member B6a Neighboring gene transient receptor potential cation channel, subfamily A, member 1a Neighboring gene potassium voltage-gated channel subfamily B member 2a Neighboring gene retinol dehydrogenase 10b Neighboring gene ubiquitin conjugating enzyme E2 Wa

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Cold acclimation-induced up-regulation of the ribosomal protein L7 gene in the freeze tolerant wood frog, Rana sylvatica. Wu S, et al. Gene, 2008 Nov 15. PMID 18706984
  2. A comparative study of nickel nanoparticle and ionic nickel toxicities in zebrafish: histopathological changes and oxidative stress. Yokota S, et al. J Toxicol Sci, 2019. PMID 31708531
  3. Genomic organization and transcription of the medaka and zebrafish cellular retinol-binding protein (rbp) genes. Parmar MB, et al. Mar Genomics, 2013 Sep. PMID 23632098
  4. Stability evaluation of reference genes for real-time PCR in zebrafish (Danio rerio) exposed to cadmium chloride and subsequently infected by bacteria Aeromonas hydrophila. Lang X, et al. Aquat Toxicol, 2016 Jan. PMID 26675370
  5. Loss of p53 synthesis in zebrafish tumors with ribosomal protein gene mutations. MacInnes AW, et al. Proc Natl Acad Sci U S A, 2008 Jul 29. PMID 18641120, Free PMC Article

See all (20) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of cell cycle IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
60S ribosomal protein L7

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213644.2 → NP_998809.1  60S ribosomal protein L7

    See identical proteins and their annotated locations for NP_998809.1

    Status: PROVISIONAL

    Source sequence(s)
    AY561515
    UniProtKB/TrEMBL
    A0A8M1PFF6, Q6Q417
    Related
    ENSDARP00000018980.9, ENSDART00000019149.10
    Conserved Domains (3) summary
    cd01657
    Location:87 → 246
    Ribosomal_L7_archeal_euk; Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds domain II of the 23S rRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The ...
    TIGR01310
    Location:14 → 246
    uL30_euk; 60S ribosomal protein uL30, eukaryotic form
    pfam08079
    Location:15 → 85
    Ribosomal_L30_N; Ribosomal L30 N-terminal domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    30177476..30182333 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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