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trm5 tRNA (guanine) methyltransferase Trm5 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 3361429, updated on 13-Mar-2024

Summary

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Gene symbol
trm5
Gene description
tRNA (guanine) methyltransferase Trm5
Primary source
PomBase:SPAPB18E9.01
Locus tag
SPAPB18E9.01
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See trm5 in Genome Data Viewer
Location:
chromosome: I
Exon count:
8
Sequence:
Chromosome: I; NC_003424.3 (3974310..3976265)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene isocitrate dehydrogenase (NAD+) subunit 1 Idh1 Neighboring gene putative S-malonyltransferase Mct1 Neighboring gene ubiquitin-60S ribosomal protein L40 fusion protein Neighboring gene uncharacterized protein Neighboring gene miscRNA Neighboring gene putative serine/threonine protein kinase Ppk18 Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large scale screening of genetic interaction with sgf73(+) in fission yeast. Guo Y, et al. Yi Chuan, 2014 Jul. PMID 25076038
  2. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human. Vo TV, et al. Cell, 2016 Jan 14. PMID 26771498, Free PMC Article
  3. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  4. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables tRNA (guanine(37)-N1)-methyltransferase activity ISO
Inferred from Sequence Orthology
more info
  
enables tRNA methyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in mitochondrial tRNA methylation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in tRNA N1-guanine methylation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in mitochondrial matrix IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
tRNA (guanine) methyltransferase Trm5

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    3974310..3976265
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019824.3 → NP_001018269.2  tRNA (guanine) methyltransferase Trm5 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_001018269.2

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q8TFG7
    Conserved Domains (2) summary
    pfam02475
    Location:141 → 390
    Met_10; Met-10+ like-protein
    cl17173
    Location:265 → 304
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
Heading Accession and Version

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