clic1 chloride intracellular channel 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: clic1provided by ZNC
Official Full Name: chloride intracellular channel 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-3202
See related: Ensembl:ENSDARG00000103340 AllianceGenome:ZFIN:ZDB-GENE-030131-3202
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:77044; wu:fc30e04
Summary: Predicted to enable chloride channel activity. Predicted to be involved in chloride transport. Predicted to act upstream of or within glutathione metabolic process; ion transport; and regulation of ion transmembrane transport. Predicted to be part of chloride channel complex. Predicted to be active in cytoplasm and membrane. Orthologous to human CLIC1 (chloride intracellular channel 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 19

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	19	NC_007130.7 (18758266..18765909)
105	previous assembly	GRCz10 (GCF_000002035.5)	19	NC_007130.6 (17470337..17477980)

Chromosome 19 - NC_007130.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

AI722702 (e-PCR)
- UniSTS:205990

fc30e04.x1 (e-PCR)
- UniSTS:193488

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables chloride channel activity	IBA Inferred from Biological aspect of Ancestor more info
enables chloride channel activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in chloride transport	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within chloride transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within monoatomic ion transmembrane transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within monoatomic ion transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of chloride channel complex	IEA Inferred from Electronic Annotation more info
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in endoplasmic reticulum	IEA Inferred from Electronic Annotation more info
is_active_in membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info
part_of monoatomic ion channel complex	IEA Inferred from Electronic Annotation more info
located_in nuclear membrane	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
located_in plasma membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: chloride intracellular channel protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_212682.1 → NP_997847.1 chloride intracellular channel protein 1

See identical proteins and their annotated locations for NP_997847.1

Status: PROVISIONAL

Source sequence(s)

BC066618

UniProtKB/TrEMBL

Q6NYF2

Related

ENSDARP00000139434.1, ENSDART00000158935.2

Conserved Domains (3) summary

TIGR00862
Location:6 → 241

O-ClC; intracellular chloride channel protein

cd10300
Location:100 → 238

GST_C_CLIC1; C-terminal, alpha helical domain of Chloride Intracellular Channel 1

cd03061
Location:3 → 93

GST_N_CLIC; GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated ...