bin3 bridging integrator 3 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: bin3provided by ZNC
Official Full Name: bridging integrator 3provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-2696
See related: Ensembl:ENSDARG00000099651 AllianceGenome:ZFIN:ZDB-GENE-030131-2696
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fc15h07; wu:fc15h07; zgc:158415
Summary: Predicted to contribute to lipid binding activity. Predicted to be involved in actin cortical patch localization; endocytosis; and plasma membrane tubulation. Predicted to be located in cytoplasm. Orthologous to human BIN3 (bridging integrator 3). [provided by Alliance of Genome Resources, Apr 2022]
Annotation information: Annotation category: partial on reference assembly
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 8

Exon count:: 15

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	8	NC_007119.7 (50743037..50839565)
105	previous assembly	GRCz10 (GCF_000002035.5)	8	NC_007119.6 (50823939..50851228, complement)

Chromosome 8 - NC_007119.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fc15h07.x1 (e-PCR)
- UniSTS:192757

fc15h07.x1 (e-PCR)
- UniSTS:192758

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
contributes_to lipid binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in actin cortical patch localization	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within actin cortical patch localization	IEA Inferred from Electronic Annotation more info
involved_in endocytosis	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within endocytosis	IEA Inferred from Electronic Annotation more info
involved_in plasma membrane tubulation	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in actin cytoskeleton	IBA Inferred from Biological aspect of Ancestor more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytoskeleton	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: bridging integrator 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.