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Cimip2a ciliary microtubule inner protein 2A [ Rattus norvegicus (Norway rat) ]

Gene ID: 311797, updated on 11-Apr-2024

Summary

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Official Symbol
Cimip2aprovided by RGD
Official Full Name
ciliary microtubule inner protein 2Aprovided by RGD
Primary source
RGD:1562762
See related
Ensembl:ENSRNOG00000010019 AllianceGenome:RGD:1562762
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Fam166a
Summary
Predicted to be located in ciliary basal body. Orthologous to human FAM166A (family with sequence similarity 166 member A). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Testes (RPKM 269.5), Brain (RPKM 57.7) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Cimip2a in Genome Data Viewer
Location:
3p13
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (28429413..28437210)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (8030548..8038370)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (2434348..2441706)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L23-like Neighboring gene torsin family 4, member A Neighboring gene negative elongation factor complex member B Neighboring gene RNA, U6 small nuclear 136 Neighboring gene sperm-tail PG-rich repeat containing 3 Neighboring gene uncharacterized LOC120101506 Neighboring gene tubulin, beta 4B class IVb Neighboring gene solute carrier family 34 member 3 Neighboring gene ring finger protein 224

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Proteomic characterization of the human sperm nucleus. de Mateo S, et al. Proteomics, 2011 Jul. PMID 21630459
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC114439

Gene Ontology Provided by RGD

Component Evidence Code Pubs
is_active_in axonemal A tubule inner sheath ISO
Inferred from Sequence Orthology
more info
  
located_in ciliary basal body ISO
Inferred from Sequence Orthology
more info
  
located_in motile cilium IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ciliary microtubule inner protein 2A
Names
family with sequence similarity 166, member A
protein FAM166A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001025694.2 → NP_001020865.1  ciliary microtubule inner protein 2A

    See identical proteins and their annotated locations for NP_001020865.1

    Status: PROVISIONAL

    Source sequence(s)
    BC097396
    UniProtKB/Swiss-Prot
    Q4QR77
    UniProtKB/TrEMBL
    A6JT16
    Related
    ENSRNOP00000013335.2, ENSRNOT00000013335.5
    Conserved Domains (1) summary
    pfam10629
    Location:13 → 45
    DUF2475; Protein of unknown function (DUF2475)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    28429413..28437210
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039105194.2 → XP_038961122.1  ciliary microtubule inner protein 2A isoform X2

    Conserved Domains (1) summary
    pfam10629
    Location:13 → 45
    DUF2475; Protein of unknown function (DUF2475)

  2. XM_039105192.2 → XP_038961120.1  ciliary microtubule inner protein 2A isoform X1

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q4QR77.1 GenPept UniProtKB/Swiss-Prot:Q4QR77

Gene LinkOut

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