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Gse1 Gse1 coiled-coil protein [ Rattus norvegicus (Norway rat) ]

Gene ID: 307913, updated on 13-Apr-2024

Summary

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Official Symbol
Gse1provided by RGD
Official Full Name
Gse1 coiled-coil proteinprovided by RGD
Primary source
RGD:1562686
See related
Ensembl:ENSRNOG00000017489 AllianceGenome:RGD:1562686
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1562686
Summary
Orthologous to human GSE1 (Gse1 coiled-coil protein). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Thymus (RPKM 82.9), Spleen (RPKM 47.0) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
19q12
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (65182678..65538183)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (48274164..48629456)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (53799945..54153732)

Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene CBY1 interacting BAR domain containing 2 Neighboring gene uncharacterized LOC102551361 Neighboring gene uncharacterized LOC102551937 Neighboring gene uncharacterized LOC134483396 Neighboring gene 5S ribosomal RNA Neighboring gene similar to human chromosome 16 open reading frame 74 Neighboring gene GINS complex subunit 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. GSE1 predicts poor survival outcome in gastric cancer patients by SLC7A5 enhancement of tumor growth and metastasis. Ding K, et al. J Biol Chem, 2018 Mar 16. PMID 29367342, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
genetic suppressor element 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001427026.1 → NP_001413955.1  genetic suppressor element 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000019
    UniProtKB/TrEMBL
    A6IZM2, F1M4A7

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086037.1 Reference GRCr8

    Range
    65182678..65538183
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017601449.3 → XP_017456938.2  genetic suppressor element 1 isoform X1

    UniProtKB/TrEMBL
    A0A8I6A4U2, A0A8I6AG34
    Related
    ENSRNOP00000091424.1
    Conserved Domains (1) summary
    pfam12540
    Location:1439 → 1579
    DUF3736; Protein of unknown function (DUF3736)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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