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Ptar1 protein prenyltransferase alpha subunit repeat containing 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 286972, updated on 5-Mar-2024

Summary

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Official Symbol
Ptar1provided by RGD
Official Full Name
protein prenyltransferase alpha subunit repeat containing 1provided by RGD
Primary source
RGD:708369
See related
Ensembl:ENSRNOG00000014891 AllianceGenome:RGD:708369
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable protein prenyltransferase activity. Predicted to be involved in protein prenylation. Predicted to be active in cytoplasm. Orthologous to human PTAR1 (protein prenyltransferase alpha subunit repeat containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Lung (RPKM 178.7), Thymus (RPKM 153.0) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
1q51
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (230709731..230753380)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (221283306..221326861)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (241501679..241557651)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S12-like Neighboring gene cilia and flagella associated protein 95 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene uncharacterized LOC120098082 Neighboring gene RNA, U6 small nuclear 65 Neighboring gene amyloid beta precursor protein binding family A member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables protein prenyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein prenylation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
protein prenyltransferase alpha subunit repeat-containing protein 1
Names
GABAC receptor subunit (Rho2)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001105760.2 → NP_001099230.2  protein prenyltransferase alpha subunit repeat-containing protein 1

    See identical proteins and their annotated locations for NP_001099230.2

    Status: PROVISIONAL

    Source sequence(s)
    CH473953
    UniProtKB/TrEMBL
    A6I0N9, D3ZWG9
    Related
    ENSRNOP00000051656.2, ENSRNOT00000054775.3
    Conserved Domains (2) summary
    PLN02789
    Location:82 → 346
    PLN02789; farnesyltranstransferase
    pfam01239
    Location:180 → 207
    PPTA; Protein prenyltransferase alpha subunit repeat

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    230709731..230753380
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063282649.1 → XP_063138719.1  protein prenyltransferase alpha subunit repeat-containing protein 1 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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