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vma16 putative V-type ATPase V0 subunit c'' [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2541999, updated on 11-Apr-2024

Summary

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Gene symbol
vma16
Gene description
putative V-type ATPase V0 subunit c''
Primary source
PomBase:SPAC2C4.13
Locus tag
SPAC2C4.13
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (4281426..4284515)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene RNA-binding protein Rbp28 Neighboring gene putative tRNA 2'-phosphotransferase Tpt1 Neighboring gene PAK-like kinase Ppk11 Neighboring gene UBX domain protein Ubx2 Neighboring gene 40S ribosomal protein S8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. btn1, the Schizosaccharomyces pombe homologue of the human Batten disease gene CLN3, regulates vacuole homeostasis. Gachet Y, et al. J Cell Sci, 2005 Dec 1. PMID 16291725
  2. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  3. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables ATP hydrolysis activity IC
Inferred by Curator
more info
  
contributes_to proton-transporting ATPase activity, rotational mechanism ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in proton transmembrane transport IC
Inferred by Curator
more info
  
involved_in vacuolar acidification ISO
Inferred from Sequence Orthology
more info
 PubMed 
Component Evidence Code Pubs
is_active_in endoplasmic reticulum HDA PubMed 
is_active_in fungal-type vacuole membrane IC
Inferred by Curator
more info
  
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of vacuolar proton-transporting V-type ATPase, V0 domain ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
putative V-type ATPase V0 subunit c''

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    4281426..4284515
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019945.2 → NP_594516.1  putative V-type ATPase V0 subunit c'' [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594516.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O14046
    Conserved Domains (2) summary
    pfam00137
    Location:130 → 191
    ATP-synt_C; ATP synthase subunit C
    cl00466
    Location:45 → 155
    ATP-synt_C; ATP synthase subunit C
Nucleotide Protein
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Gene LinkOut

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