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Phf11b PHD finger protein 11B [ Mus musculus (house mouse) ]

Gene ID: 236451, updated on 8-Feb-2024

Summary

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Official Symbol
Phf11bprovided by MGI
Official Full Name
PHD finger protein 11Bprovided by MGI
Primary source
MGI:MGI:3645789
See related
Ensembl:ENSMUSG00000091649 AllianceGenome:MGI:3645789
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm4902; EG236451
Summary
Predicted to be located in nuclear membrane and nucleoplasm. Predicted to be active in nucleus. Orthologous to human PHF11 (PHD finger protein 11). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in spleen adult (RPKM 7.0), mammary gland adult (RPKM 5.4) and 20 other tissues See more
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Genomic context

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Location:
14 C3; 14 31.48 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (59558413..59578826, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (59320964..59341388, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene PHD finger protein 11 Neighboring gene PHD finger protein 11A Neighboring gene STARR-positive B cell enhancer mm9_chr14:59916339-59916640 Neighboring gene STARR-positive B cell enhancer ABC_E11570 Neighboring gene STARR-seq mESC enhancer starr_36838 Neighboring gene PHD finger protein 11D Neighboring gene STARR-seq mESC enhancer starr_36839 Neighboring gene predicted gene, 45935 Neighboring gene PHD finger protein 11C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Functional analysis of a novel ENU-induced PHD finger 11 (Phf11) mouse mutant. Zhang Y, et al. Mamm Genome, 2014 Dec. PMID 25091723, Free PMC Article
  2. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nuclear membrane ISO
Inferred from Sequence Orthology
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
PHD finger protein 11 family member

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164327.1 → NP_001157799.1  PHD finger protein 11 family member

    See identical proteins and their annotated locations for NP_001157799.1

    Status: VALIDATED

    Source sequence(s)
    AC114007
    Consensus CDS
    CCDS49510.1
    UniProtKB/TrEMBL
    B4XVQ1
    Related
    ENSMUSP00000127857.2, ENSMUST00000166121.4
    Conserved Domains (1) summary
    cl22851
    Location:28 → 142
    PHD_SF; PHD finger superfamily

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    59558413..59578826 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006518927.4 → XP_006518990.1  PHD finger protein 11 family member isoform X1

    Conserved Domains (1) summary
    cl22851
    Location:28 → 142
    PHD_SF; PHD finger superfamily

  2. XM_030247783.2 → XP_030103643.1  PHD finger protein 11 family member isoform X4

    Conserved Domains (1) summary
    cl22851
    Location:1 → 88
    PHD_SF; PHD finger superfamily

  3. XM_006518928.5 → XP_006518991.1  PHD finger protein 11 family member isoform X3

    Conserved Domains (1) summary
    cl22851
    Location:1 → 88
    PHD_SF; PHD finger superfamily

  4. XM_036158581.1 → XP_036014474.1  PHD finger protein 11 family member isoform X2

    Conserved Domains (1) summary
    cl22851
    Location:6 → 120
    PHD_SF; PHD finger superfamily
Nucleotide Protein Strain
Heading Accession and Version

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