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9330159F19Rik RIKEN cDNA 9330159F19 gene [ Mus musculus (house mouse) ]

Gene ID: 212448, updated on 5-Mar-2024

Summary

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Official Symbol
9330159F19Rikprovided by MGI
Official Full Name
RIKEN cDNA 9330159F19 geneprovided by MGI
Primary source
MGI:MGI:3036239
See related
Ensembl:ENSMUSG00000004360 AllianceGenome:MGI:3036239
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in nervous system and sensory organ. Orthologous to human KIAA0408 (KIAA0408). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in CNS E18 (RPKM 22.1), whole brain E14.5 (RPKM 15.0) and 6 other tissues See more
Orthologs
human all
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Genomic context

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See 9330159F19Rik in Genome Data Viewer
Location:
10 A4; 10 16.55 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (29074937..29106775)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (29198942..29230779)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene UPF0762 protein C6orf58 homolog Neighboring gene phosphatidylethanolamine-binding protein pseudogene Neighboring gene STARR-seq mESC enhancer starr_26173 Neighboring gene STARR-seq mESC enhancer starr_26174 Neighboring gene MTCL family member 3 Neighboring gene STARR-seq mESC enhancer starr_26176 Neighboring gene predicted gene, 46218 Neighboring gene STARR-seq mESC enhancer starr_26177 Neighboring gene enoyl Coenzyme A hydratase domain containing 1 Neighboring gene STARR-positive B cell enhancer ABC_E6827 Neighboring gene ring finger protein 146 Neighboring gene predicted gene, 25596

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein KIAA0408 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001162537.2 → NP_001156009.1  uncharacterized protein KIAA0408 homolog

    See identical proteins and their annotated locations for NP_001156009.1

    Status: VALIDATED

    Source sequence(s)
    AC153912, BC138279, CJ109378
    Consensus CDS
    CCDS48527.1
    UniProtKB/TrEMBL
    D3Z623
    Related
    ENSMUSP00000090291.5, ENSMUST00000092627.6
    Conserved Domains (1) summary
    pfam14818
    Location:16 → 149
    DUF4482; Domain of unknown function (DUF4482)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    29074937..29106775
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017313869.3 → XP_017169358.1  uncharacterized protein KIAA0408 homolog isoform X1

    UniProtKB/TrEMBL
    D3Z623
    Conserved Domains (1) summary
    pfam14818
    Location:16 → 149
    DUF4482; Domain of unknown function (DUF4482)

  2. XM_006512646.3 → XP_006512709.1  uncharacterized protein KIAA0408 homolog isoform X1

    See identical proteins and their annotated locations for XP_006512709.1

    UniProtKB/TrEMBL
    D3Z623
    Conserved Domains (1) summary
    pfam14818
    Location:16 → 149
    DUF4482; Domain of unknown function (DUF4482)

  3. XM_017313870.3 → XP_017169359.1  uncharacterized protein KIAA0408 homolog isoform X1

    UniProtKB/TrEMBL
    D3Z623
    Conserved Domains (1) summary
    pfam14818
    Location:16 → 149
    DUF4482; Domain of unknown function (DUF4482)

  4. XM_006512649.3 → XP_006512712.1  uncharacterized protein KIAA0408 homolog isoform X1

    See identical proteins and their annotated locations for XP_006512712.1

    UniProtKB/TrEMBL
    D3Z623
    Related
    ENSMUSP00000151062.2, ENSMUST00000213489.2
    Conserved Domains (1) summary
    pfam14818
    Location:16 → 149
    DUF4482; Domain of unknown function (DUF4482)

  5. XM_036155721.1 → XP_036011614.1  uncharacterized protein KIAA0408 homolog isoform X1

    UniProtKB/TrEMBL
    D3Z623
    Conserved Domains (1) summary
    pfam14818
    Location:16 → 149
    DUF4482; Domain of unknown function (DUF4482)
Nucleotide Protein Strain
Heading Accession and Version

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