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Vmn1r83 vomeronasal 1 receptor 83 [ Mus musculus (house mouse) ]

Gene ID: 171243, updated on 8-Feb-2024

Summary

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Official Symbol
Vmn1r83provided by MGI
Official Full Name
vomeronasal 1 receptor 83provided by MGI
Primary source
MGI:MGI:2159647
See related
Ensembl:ENSMUSG00000066804 AllianceGenome:MGI:2159647
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
V1rg8
Summary
Predicted to enable pheromone binding activity and pheromone receptor activity. Predicted to act upstream of or within response to pheromone. Predicted to be integral component of plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See Vmn1r83 in Genome Data Viewer
Location:
7 A1; 7 7.46 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (12054177..12056055, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (12320250..12322128, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene vomeronasal 1 receptor 81 Neighboring gene vomeronasal 1 receptor 82 Neighboring gene STARR-seq mESC enhancer starr_18050 Neighboring gene vomeronasal 1 receptor 84 Neighboring gene vomeronasal 1 receptor, pseudogene 66

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multiple new and isolated families within the mouse superfamily of V1r vomeronasal receptors. Rodriguez I, et al. Nat Neurosci, 2002 Feb. PMID 11802169
  2. Manual annotation and analysis of the defensin gene cluster in the C57BL/6J mouse reference genome. Amid C, et al. BMC Genomics, 2009 Dec 15. PMID 20003482, Free PMC Article
  3. Extreme variability among mammalian V1R gene families. Young JM, et al. Genome Res, 2010 Jan. PMID 19952141, Free PMC Article
  4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables pheromone binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables pheromone receptor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within response to pheromone ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 

General protein information

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Preferred Names
vomeronasal 1 receptor 83
Names
vomernasal 1 receptor Vmn1r83
vomeronasal 1 receptor, G8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_134209.1 → NP_598970.1  vomeronasal 1 receptor 83

    See identical proteins and their annotated locations for NP_598970.1

    Status: PROVISIONAL

    Source sequence(s)
    AY065523
    Consensus CDS
    CCDS20807.1
    UniProtKB/TrEMBL
    Q8R287
    Related
    ENSMUSP00000083406.3, ENSMUST00000086229.3
    Conserved Domains (1) summary
    pfam03402
    Location:44 → 289
    V1R; Vomeronasal organ pheromone receptor family, V1R

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    12054177..12056055 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017322006.1 → XP_017177495.1  vomeronasal 1 receptor 83 isoform X1

    Conserved Domains (2) summary
    cd14964
    Location:9 → 34
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:9 → 299
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
Nucleotide Protein Strain
Heading Accession and Version

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