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PepMoVgp1 polyprotein [ Pepper mottle virus ]

Gene ID: 1494047, updated on 18-Aug-2023

Summary

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Gene symbol
PepMoVgp1
Gene description
polyprotein
Locus tag
PepMoVgp1
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Pepper mottle virus
Lineage
Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae; Potyvirus
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Genomic context

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Sequence:
NC_001517.1 (168..9374)

NC_001517.1Genomic Context describing neighboring genes Neighboring gene PIPO

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001517.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The complete nucleotide sequence of pepper mottle virus genomic RNA: comparison of the encoded polyprotein with those of other sequenced potyviruses. Vance VB, et al. Virology, 1992 Nov. PMID 1413501

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
polyprotein
Names
P1 protein
HC-Pro protein
P3 protein
CI protein
6K2 protein
NIa-VPg protein
NIb protein
coat protein
6K1 protein
NIa-Pro protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001517.1 Reference assembly

    Range
    168..9374
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_041276.1 polyprotein [Pepper mottle virus]

    See identical proteins and their annotated locations for NP_041276.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q01500
    UniProtKB/TrEMBL
    C7S7D9, C7S7F2
    Conserved Domains (10) summary
    smart00487
    Location:1231 → 1382
    DEXDc; DEAD-like helicases superfamily
    cd00046
    Location:1235 → 1362
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam01577
    Location:44 → 286
    Peptidase_S30; Potyvirus P1 protease
    pfam00271
    Location:1408 → 1515
    Helicase_C; Helicase conserved C-terminal domain
    pfam00680
    Location:2294 → 2761
    RdRP_1; RNA dependent RNA polymerase
    pfam00767
    Location:2834 → 3066
    Poty_coat; Potyvirus coat protein
    pfam00851
    Location:305 → 743
    Peptidase_C6; Helper component proteinase
    pfam00863
    Location:2029 → 2262
    Peptidase_C4; Peptidase family C4
    pfam08440
    Location:1541 → 1813
    Poty_PP; Potyviridae polyprotein
    pfam13608
    Location:770 → 1207
    Potyvirid-P3; Protein P3 of Potyviral polyprotein

  2. NP_734429.1 P1 protein

    Conserved Domains (1) summary
    pfam01577
    Location:44 → 286
    Peptidase_S30; Potyvirus P1 protease

  3. NP_734430.1 HC-Pro protein

    Conserved Domains (1) summary
    pfam00851
    Location:18 → 456
    Peptidase_C6; Helper component proteinase

  4. NP_734431.1 P3 protein

    Conserved Domains (1) summary
    pfam13608
    Location:27 → 361
    Potyvirid-P3; Protein P3 of Potyviral polyprotein

  5. NP_734432.1 CI protein

    Conserved Domains (5) summary
    smart00487
    Location:75 → 226
    DEXDc; DEAD-like helicases superfamily
    cd00046
    Location:79 → 206
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00271
    Location:252 → 359
    Helicase_C; Helicase conserved C-terminal domain
    pfam08440
    Location:385 → 634
    Poty_PP; Potyviridae polyprotein
    pfam13608
    Location:1 → 51
    Potyvirid-P3; Protein P3 of Potyviral polyprotein

  6. NP_734433.1 6K2 protein

  7. NP_734434.1 NIa-VPg protein

  8. NP_734435.1 NIb protein

    Conserved Domains (1) summary
    pfam00680
    Location:18 → 485
    RdRP_1; RNA dependent RNA polymerase

  9. NP_734436.1 coat protein

    UniProtKB/TrEMBL
    Q8JZI1, Q8JZI3
    Conserved Domains (1) summary
    pfam00767
    Location:39 → 271
    Poty_coat; Potyvirus coat protein

  10. NP_734437.1 6K1 protein

    Conserved Domains (1) summary
    pfam13608
    Location:1 → 52
    Potyvirid-P3; Protein P3 of Potyviral polyprotein

  11. NP_734438.1 NIa-Pro protein

    Conserved Domains (1) summary
    pfam00863
    Location:2 → 232
    Peptidase_C4; Peptidase family C4
Nucleotide Protein
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