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blzf1 basic leucine zipper nuclear factor 1 [ Danio rerio (zebrafish) ]

Gene ID: 114452, updated on 27-Mar-2024

Summary

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Official Symbol
blzf1provided by ZNC
Official Full Name
basic leucine zipper nuclear factor 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-010724-1
See related
Ensembl:ENSDARG00000011299 AllianceGenome:ZFIN:ZDB-GENE-010724-1
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fe06a04; Golgin45; zgc:66280; zgc:85871; wu:fe06a04
Summary
Acts upstream of or within Golgi organization; cell-matrix adhesion; and muscle tissue morphogenesis. Predicted to be active in Golgi membrane. Is expressed in head; notochord; and somite. Orthologous to human BLZF1 (basic leucine zipper nuclear factor 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (494297..505620)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (499118..510441)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene tripeptidyl peptidase 2 Neighboring gene protein-lysine methyltransferase METTL21C-like Neighboring gene methyltransferase like 21e Neighboring gene excision repair cross-complementation group 5 Neighboring gene si:ch73-41e3.7 Neighboring gene tRNA methyltransferase 10C, mitochondrial RNase P subunit Neighboring gene thioredoxin-like 4B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Identification of novel MYO18A interaction partners required for myoblast adhesion and muscle integrity. Cao JM, et al. Sci Rep, 2016 Nov 8. PMID 27824130, Free PMC Article
  2. Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain. Sreenivasan R, et al. PLoS One, 2008 Mar 12. PMID 18335061, Free PMC Article
  3. Contrasted innate responses to two viruses in zebrafish: insights into the ancestral repertoire of vertebrate IFN-stimulated genes. Briolat V, et al. J Immunol, 2014 May 1. PMID 24683187
  4. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  5. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in Golgi organization IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within Golgi organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within Golgi organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in Golgi to plasma membrane protein transport IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within Golgi to plasma membrane protein transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within cell-matrix adhesion IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within muscle tissue morphogenesis IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within muscle tissue morphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in Golgi membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
golgin-45

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001144803.1 → NP_001138275.1  golgin-45

    See identical proteins and their annotated locations for NP_001138275.1

    Status: PROVISIONAL

    Source sequence(s)
    CU571081
    UniProtKB/TrEMBL
    A0A8M1NPT0, B8JM41
    Related
    ENSDARP00000102207.3, ENSDART00000108579.5
    Conserved Domains (2) summary
    pfam06785
    Location:121 → 249
    UPF0242; Uncharacterized protein family (UPF0242)
    pfam08227
    Location:179 → 224
    DASH_Hsk3; DASH complex subunit Hsk3 like

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    494297..505620
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021476915.1 → XP_021332590.1  golgin-45 isoform X1

    UniProtKB/TrEMBL
    A0A8M1NPT0, B8JM41
    Conserved Domains (2) summary
    pfam06785
    Location:121 → 249
    UPF0242; Uncharacterized protein family (UPF0242)
    pfam08227
    Location:179 → 224
    DASH_Hsk3; DASH complex subunit Hsk3 like
Nucleotide Protein
Heading Accession and Version

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