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klf9 Kruppel-like factor 9 [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102237378, updated on 10-Mar-2024

Summary

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Gene symbol
klf9
Gene description
Kruppel-like factor 9
See related
Ensembl:ENSXMAG00000001428
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 12
Exon count:
3
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 12 NC_036454.1 (22112237..22116618, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372404.1 (622164..624396)

Chromosome 12 - NC_036454.1Genomic Context describing neighboring genes Neighboring gene beta-carotene 15, 15-dioxygenase 2, like Neighboring gene elastase 3 like Neighboring gene family with sequence similarity 219 member Ab Neighboring gene transient receptor potential cation channel, subfamily M, member 3 Neighboring gene cell migration inducing hyaluronidase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Krueppel-like factor 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036454.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    22112237..22116618 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023343986.1 → XP_023199754.1  Krueppel-like factor 9

    UniProtKB/TrEMBL
    M3ZGS1
    Conserved Domains (3) summary
    COG5048
    Location:115 → 167
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:108 → 125
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:161 → 183
    zf-C2H2; Zinc finger, C2H2 type

  2. XM_005808499.2 → XP_005808556.2  Krueppel-like factor 9

    UniProtKB/TrEMBL
    M3ZGS1
    Related
    ENSXMAP00000001413.2, ENSXMAT00000001416.2
    Conserved Domains (3) summary
    COG5048
    Location:115 → 167
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:108 → 125
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:161 → 183
    zf-C2H2; Zinc finger, C2H2 type
Nucleotide Protein Strain
Heading Accession and Version

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