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Zbtb2 zinc finger and BTB domain containing 2 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101975294, updated on 8-Mar-2024

Summary

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Gene symbol
Zbtb2
Gene description
zinc finger and BTB domain containing 2
Locus tag
H1C71_026849
See related
EnsemblRapid:ENSSTOG00015007144
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024404946.1 (137013913..137032836, complement)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936489.1 (4265913..4274099, complement)

NW_024404946.1Genomic Context describing neighboring genes Neighboring gene transfer RNA alanine (anticodon CGC) Neighboring gene A-kinase anchoring protein 12 Neighboring gene required for meiotic nuclear division 1 homolog Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene acidic residue methyltransferase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024404946.1 Reference HiC_Itri_2 Primary Assembly

    Range
    137013913..137032836 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040283450.1 → XP_040139384.1  zinc finger and BTB domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    I3NF82
    Conserved Domains (4) summary
    sd00017
    Location:365 → 385
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18193
    Location:3 → 117
    BTB_POZ_ZBTB2; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 2 (ZBTB2)
    pfam00096
    Location:363 → 385
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:377 → 399
    zf-H2C2_2; Zinc-finger double domain

  2. XM_005321371.4 → XP_005321428.2  zinc finger and BTB domain-containing protein 2 isoform X1

    Related
    ENSSTOP00015008706.1, ENSSTOT00015009608.1
    Conserved Domains (3) summary
    smart00355
    Location:429 → 451
    ZnF_C2H2; zinc finger
    sd00017
    Location:431 → 451
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18193
    Location:69 → 183
    BTB_POZ_ZBTB2; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 2 (ZBTB2)
Nucleotide Protein
Heading Accession and Version

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