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LOC101261650 glucan endo-1,3-beta-glucosidase B [ Solanum lycopersicum (tomato) ]

Gene ID: 101261650, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101261650
Gene description
glucan endo-1,3-beta-glucosidase B
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101261650 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 1 NC_015438.3 (69321675..69323616)
102 previous assembly SL2.50 (GCF_000188115.3) 1 NC_015438.2 (69301429..69303370)

Chromosome 1 - NC_015438.3Genomic Context describing neighboring genes Neighboring gene pectinesterase inhibitor 3-like Neighboring gene DELLA protein RGL2-like Neighboring gene uncharacterized LOC101244610 Neighboring gene glucan endo-1,3-beta-glucosidase, basic-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucan endo-1,3-beta-glucosidase B
NP_001299819.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001312890.1 → NP_001299819.1  glucan endo-1,3-beta-glucosidase B precursor

    Status: PROVISIONAL

    Source sequence(s)
    AW031402, AW034141, BI423195
    UniProtKB/Swiss-Prot
    Q01413
    UniProtKB/TrEMBL
    A0A3Q7EEZ8
    Conserved Domains (1) summary
    pfam00332
    Location:27 → 339
    Glyco_hydro_17; Glycosyl hydrolases family 17

RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015438.3 Reference SL3.0 Primary Assembly

    Range
    69321675..69323616
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases