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ARID4B AT-rich interaction domain 4B [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101053919, updated on 8-Mar-2024

Summary

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Gene symbol
ARID4B
Gene description
AT-rich interaction domain 4B
See related
EnsemblRapid:ENSSBOG00000020196
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100960.1 (8575257..8743158, complement)

NW_024100960.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA14 Neighboring gene translocase of outer mitochondrial membrane 20 Neighboring gene U4 spliceosomal RNA Neighboring gene RNA binding motif protein 34 Neighboring gene 40S ribosomal protein S15-like Neighboring gene geranylgeranyl diphosphate synthase 1 Neighboring gene tubulin folding cofactor E Neighboring gene beta-1,3-N-acetylgalactosaminyltransferase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100960 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AT-rich interactive domain-containing protein 4B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100960.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    8575257..8743158 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039464296.1 → XP_039320230.1  AT-rich interactive domain-containing protein 4B isoform X1

    UniProtKB/TrEMBL
    A0A2K6SGJ1
    Related
    ENSSBOP00000006479.2, ENSSBOT00000023216.2
    Conserved Domains (5) summary
    cd16883
    Location:308 → 399
    ARID_ARID4B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
    pfam08169
    Location:170 → 263
    RBB1NT; RBB1NT (NUC162) domain
    cd20460
    Location:1 → 61
    Tudor_ARID4B_rpt1; first Tudor domain found in AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
    cd20462
    Location:62 → 118
    Tudor_ARID4B_rpt2; second Tudor domain found in AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
    cl28914
    Location:574 → 631
    CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

  2. XM_039464297.1 → XP_039320231.1  AT-rich interactive domain-containing protein 4B isoform X1

    UniProtKB/TrEMBL
    A0A2K6SGJ1
    Conserved Domains (5) summary
    cd16883
    Location:308 → 399
    ARID_ARID4B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
    pfam08169
    Location:170 → 263
    RBB1NT; RBB1NT (NUC162) domain
    cd20460
    Location:1 → 61
    Tudor_ARID4B_rpt1; first Tudor domain found in AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
    cd20462
    Location:62 → 118
    Tudor_ARID4B_rpt2; second Tudor domain found in AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
    cl28914
    Location:574 → 631
    CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

  3. XM_039464298.1 → XP_039320232.1  AT-rich interactive domain-containing protein 4B isoform X2

    UniProtKB/TrEMBL
    A0A2K6SGJ6
    Related
    ENSSBOP00000006484.2, ENSSBOT00000023221.2
    Conserved Domains (5) summary
    COG5271
    Location:451 → 728
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd16883
    Location:308 → 399
    ARID_ARID4B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
    pfam08169
    Location:170 → 263
    RBB1NT; RBB1NT (NUC162) domain
    cd20460
    Location:1 → 61
    Tudor_ARID4B_rpt1; first Tudor domain found in AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
    cd20462
    Location:62 → 118
    Tudor_ARID4B_rpt2; second Tudor domain found in AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
Nucleotide Protein
Heading Accession and Version

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